Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution

文献类型： 外文期刊

第一作者： Fang, Yongjun

作者： Fang, Yongjun;Xiao, Xiaohu;Long, Xiangyu;Zeng, Xia;Hu, Yanshi;Qin, Yunxia;Yang, Jianghua;Lin, Jishan;Wang, Jiang;Liu, Kaiye;Li, Zhonghua;Xing, Jianfeng;Liu, Zhenglin;Qi, Jiyan;Zhang, Yi;Zhang, Shengmin;Ye, De;Tang, Chaorong;Lin, Qiang;Wang, Jiang;Liu, Kaiye;Li, Zhonghua;Qi, Jiyan;Zhang, Yi;Zhang, Shengmin;Ye, De;Tang, Chaorong;Wang, Jiang;Liu, Kaiye;Li, Zhonghua;Qi, Jiyan;Zhang, Yi;Zhang, Shengmin;Ye, De;Tang, Chaorong;Wang, Baiyu;Zhang, Jisen;Wang, Baiyu;Zhang, Jisen;Qi, Yiying;Liu, Jianquan;Tang, Chaorong

作者机构：

期刊名称：NATURE COMMUNICATIONS （ 影响因子：15.7； 五年影响因子：17.2 ）

ISSN：

年卷期： 2024 年 15 卷 1 期

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收录情况： SCI

摘要： The para rubber tree (Hevea brasiliensis) is the world's sole commercial source of natural rubber, a vital industrial raw material. However, the narrow genetic diversity of this crop poses challenges for rubber breeding. Here, we generate high-quality de novo genome assemblies for three H. brasiliensis cultivars, two H. brasiliensis wild accessions, and three other Hevea species (H. nitida, H. pauciflora, and H. benthamiana). Through analyzing genomes of 94 Hevea accessions, we identify five distinct lineages that do not align with their previous species delineations. We discover multiple accessions with hybrid origins between these lineages, indicating incomplete reproductive isolation between them. Only two out of four wild lineages have been introduced to commercial rubber cultivars. Furthermore, we reveal that the rubber production traits emerged following the development of a large REF/SRPP gene cluster and its functional specialization in rubber-producing laticifers within this genus. These findings would enhance rubber breeding and benefit research communities.

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