Computational identification of microRNAs and their targets in apple

文献类型: 外文期刊

第一作者: Ye, Keyong

作者: Ye, Keyong;Guo, Jianchun;Chen, Yao;Chen, Yao;Hu, Xinwen

作者机构:

关键词: Apple;MiRNA;MiRNA precursor;MiRNA target;MiRNA clusters

期刊名称:GENES & GENOMICS ( 影响因子:1.839; 五年影响因子:1.329 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: MicroRNAs (miRNAs) are small RNAs approximately 21 nucleotides in length that regulate post-transcriptional gene expression by cleaving or inhibiting the translation of target gene transcripts. Based on the conservation of miRNAs in many plant speciesand the currently available genome sequence, 154 individual conserved miRNAs have been predicted in apple (Malus domestica), and found that these miRNAs belong to 26 families. 424 miRNA:target pairs between 150 miRNAs and 235 mRNAs have been predicted in apple, and these miRNA targets are involved in development, response to biotic and abiotic stresses, and other cellular processes. From studying the miR395 and miR399 clusters in apple, it was confirmed that the expansion of miRNA gene families in apple came about via segmental duplications. The study of divergence in homologous miRNA indicates thatmiRNA/miRNA* region is more conservative than loop-containing region.

分类号: Q

  • 相关文献

[1]Genome-wide identification and functional prediction of novel and fungi-responsive lincRNAs in Triticum aestivum. Zhang, Hong,Hu, Weiguo,Hao, Jilei,Lv, Shikai,Wang, Changyou,Tong, Wei,Wang, Yajuan,Wang, Yanzhen,Liu, Xinlun,Ji, Wanquan,Hu, Weiguo. 2016

[2]Identification and characterization of microRNAs in Baylisascaris schroederi of the giant panda. Zhao, Guang-Hui,Xu, Min-Jun,Zhu, Xing-Quan. 2013

[3]Peanut (Arachis hypogaea L.) Omics and Biotechnology in China. Wang, Xing-Jun,Xia, Han,Wan, Shu-Bo,Zhao, Chuan-Zhi,Li, Ai-Qin,Wang, Xing-Jun,Xia, Han,Wan, Shu-Bo,Zhao, Chuan-Zhi,Li, Ai-Qin,Wang, Xing-Jun,Xia, Han,Wan, Shu-Bo,Zhao, Chuan-Zhi,Li, Ai-Qin,Liu, Shuan-Tao. 2011

[4]Small RNA profiling and degradome analysis reveal regulation of microRNA in peanut embryogenesis and early pod development. Gao, Chao,Wang, Pengfei,Zhao, Shuzhen,Zhao, Chuanzhi,Xia, Han,Hou, Lei,Zhang, Ye,Li, Changsheng,Wang, Xingjun,Wang, Xingjun,Ju, Zheng. 2017

[5]Expression profiles of miRNAs in Gossypium raimondii. Jun MA,Teng-long GUO,Qing-lian WANG,Kun-bo WANG,Run-run SUN,Bao-hong ZHANG. 2015

[6]Uncovering Male Fertility Transition Responsive miRNA in a Wheat Photo-Thermosensitive Genic Male Sterile Line by Deep Sequencing and Degradome Analysis. Bai, Jian-Fang,Wang, Yu-Kun,Wang, Peng,Duan, Wen-Jing,Yuan, Shao-Hua,Sun, Hui,Yuan, Guo-Liang,Ma, Jing-Xiu,Wang, Na,Zhang, Feng-Ting,Zhang, Li-Ping,Zhao, Chang-Ping,Bai, Jian-Fang,Wang, Yu-Kun,Wang, Peng,Duan, Wen-Jing,Yuan, Shao-Hua,Sun, Hui,Yuan, Guo-Liang,Ma, Jing-Xiu,Wang, Na,Zhang, Feng-Ting,Zhang, Li-Ping,Zhao, Chang-Ping,Wang, Peng,Duan, Wen-Jing. 2017

[7]Deep Sequencing Analysis of miRNA Expression in Breast Muscle of Fast-Growing and Slow-Growing Broilers. Ouyang, Hongjia,He, Xiaomei,Li, Guihuan,Xu, Haiping,Jia, Xinzheng,Nie, Qinghua,Zhang, Xiquan,Ouyang, Hongjia,He, Xiaomei,Li, Guihuan,Xu, Haiping,Jia, Xinzheng,Nie, Qinghua,Zhang, Xiquan,Ouyang, Hongjia,He, Xiaomei,Li, Guihuan,Xu, Haiping,Jia, Xinzheng,Nie, Qinghua,Zhang, Xiquan. 2015

[8]MicroRNAs associated with drought response in the pulse crop common bean (Phaseolus vulgaris L.). Wu, Jing,Wang, Lanfen,Wang, Shumin. 2017

[9]Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Song, Xianwei,Li, Pingchuan,Zhai, Jixian,Zhou, Ming,Ma, Lijia,Cao, Shouyun,Liu, Chunyan,Chu, Chengcai,Wang, Xiu-Jie,Cao, Xiaofeng,Song, Xianwei,Li, Pingchuan,Zhai, Jixian,Zhou, Ming,Ma, Lijia,Cao, Shouyun,Liu, Chunyan,Chu, Chengcai,Wang, Xiu-Jie,Cao, Xiaofeng,Song, Xianwei,Zhou, Ming,Li, Pingchuan,Zhai, Jixian,Jeong, Dong-Hoon,Nakano, Mayumi,Green, Pamela J.,Meyers, Blake C.,Li, Pingchuan,Zhai, Jixian,Jeong, Dong-Hoon,Nakano, Mayumi,Green, Pamela J.,Meyers, Blake C.,Liu, Bin. 2012

[10]Integration of lncRNA-miRNA-mRNA reveals novel insights into oviposition regulation in honey bees. Chen, Xiao,Chen, Chao,Shi, Wei,Liu, Zhiguang,Wang, Huihua,Guo, Haikun,Ma, Ce,Lu, Qian. 2017

[11]Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer. Bai, Yongsheng,Ding, Lizhong,Rath, Ethan,Stuart, Gary,Bai, Yongsheng,Stuart, Gary,Baker, Steve,Jiang, Feng,Bai, Jenny M.,Wu, Jianghong,Jiang, Hui. 2016

[12]The artificial microRNA mediates GUS-GFP gene silencing using ath-miR169d precursor as backbone. Liu, Chong,Zhang, Lan,Sun, Jie,Luo, Yanzhong,Fan, Yunliu,Wang, Lei,Liu, Chong,Sun, Jie,Wang, Mingbo. 2009

[13]Integrative RNA-and miRNA-Profile Analysis Reveals a Likely Role of BR and Auxin Signaling in Branch Angle Regulation of B. napus. Cheng, Hongtao,Hao, Mengyu,Wang, Wenxiang,Mei, Desheng,Liu, Jia,Wang, Hui,Sang, Shifei,Tang, Min,Zhou, Rijin,Chu, Wen,Fu, Li,Hu, Qiong,Wells, Rachel. 2017

[14]Recent advances in understanding the role of miRNAs in exosomes and their therapeutic potential. Miao Xiang-yang. 2017

[15]Sex-biased miRNAs of yellow catfish (Pelteobagrus fulvidraco) and their potential role in reproductive development. Wang, Pingping,Wang, Le,Yang, Jian,Luan, Peixian,Zhang, Xiaofeng,Kuang, Youyi,Sun, Xiaowen. 2018

[16]Effects of duloxetine on microRNA expression profile in frontal lobe and hippocampus in a mouse model of depression. Pan, Bing,Liu, Yamei. 2015

[17]Bioinformatics analysis of hemocyte miRNAs of scallop Chlamys farreri against acute viral necrobiotic virus (AVNV). Chen, Guofu,Zhang, Chunyun,Jiang, Fengjuan,Wang, Yuanyuan,Xu, Zhong,Wang, Chongming. 2014

[18]miRNAome, mRNAome and degradome analysis of Tibetan minipigs anterior pituitary. Ye, Rui-Song,Li, Meng,Chen, Ting,Wei, Xiao-Chen,Qi, Qi-En,Cheng, Xiao,Li, Chao-Yun,Jiang, Qing-Yan,Xi, Qian-Yun,Zhang, Yong-Liang. 2018

[19]Construction and application of a built-in dual luciferase reporter for microRNA functional analysis. Bi, Yanzhen,Zheng, Xinmin,Shao, Changwei,Jiang, Li,Ouyang, Huiwu,Pan, Wen. 2011

[20]Integrating Small RNA Sequencing with QTL Mapping for Identification of miRNAs and Their Target Genes Associated with Heat Tolerance at the Flowering Stage in Rice. Liu, Qing,Yang, Tifeng,Zhang, Shaohong,Mao, Xingxue,Zhao, Junliang,Wang, Xiaofei,Dong, Jingfang,Liu, Bin,Liu, Qing,Yang, Tifeng,Zhang, Shaohong,Mao, Xingxue,Zhao, Junliang,Wang, Xiaofei,Dong, Jingfang,Liu, Bin,Yu, Ting. 2017

作者其他论文 更多>>