Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences

文献类型： 外文期刊

第一作者： Gao, Zhen-Yu

作者： Gao, Zhen-Yu;Guo, Long-Biao;Peng, You-Lin;Rao, Yu-Chun;Dong, Guo-Jun;Hu, Jiang;Liu, Hui-Juan;Xu, Jie;Zeng, Da-Li;Gong, Li-Hui;Zhang, Guang-Heng;Tian, Fu-Kuan;Xue, Da-Wei;Zhu, Li;Cheng, Shi-Hua;Qian, Qian;Zhao, Shan-Cen;He, Wei-Ming;Wang, Jin-Jin;Guo, Xiao-Sen;Zhang, Xue-Mei;Zhang, Chi;Zheng, Feng-Ya;Lu, Chang-Xin;Zhou, Qing;Wu, Hai-Yang;Ni, Pei-Xiang;Liu, Deng-Hui;Ye, Chen;Wang, Jian;Zhang, Geng-Yun;Wang, Jun;Zhang, Geng-Yun;Zhao, Shan-Cen;Zheng, Feng-Ya;Zhao, Shan-Cen;Zheng, Feng-Ya;Rao, Yu-Chun;Tian, Peng;Liao, Yi;Chen, Ming-Sheng;Li, Jia-Yang

作者机构：

关键词： Genome sequence update;Oryza sativa;QTL dissection

期刊名称：PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA （ 影响因子：11.205； 五年影响因子：12.291 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The growing world population and shrinkage of arable land demand yield improvement of rice, one of the most important staple crops. To elucidate the genetic basis of yield and uncover its associated loci in rice, we resequenced the core recombinant inbred lines of Liang-You-Pei-Jiu, the widely cultivated super hybrid rice, and constructed a high-resolution linkage map. We detected 43 yield-associated quantitative trait loci, of which 20 are unique. Based on the high-density physical map, the genome sequences of paternal variety 93-11 and maternal cultivar PA64s of Liang-You-Pei-Jiu were significantly improved. The large recombinant inbred line population combined with plentiful high-quality single nucleotide polymorphisms and insertions/deletions between parental genomes allowed us to fine-map two quantitative trait loci, qSN8 and qSPB1, and to identify days to heading8 and lax panicle1 as candidate genes, respectively. The quantitative trait locus qSN8 was further confirmed to be days to heading8 by a complementation test. Our study provided an ideal platform for molecular breeding by targeting and dissecting yieldassociated loci in rice.

分类号： N

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