Complete mitochondrial genome of Cuora trifasciata (Chinese three-striped box turtle), and a comparative analysis with other box turtles

文献类型： 外文期刊

第一作者： Li, Wei

作者： Li, Wei;Zhang, Xin-Cheng;Zhao, Jian;Shi, Yan;Zhu, Xin-Ping;Li, Wei;Zhao, Jian

作者机构：

关键词： Mitochondrial genome;Cuora trifasciata;Genus Cuora;Comparative mitogenomic analysis;Phylogenetic analysis

期刊名称：GENE （ 影响因子：3.688； 五年影响因子：3.329 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Cuora trifasciata has become one of the most critically endangered species in the world. The complete mitochondrial genome of C trifasciata (Chinese three-striped box turtle) was determined in this study. Its mitochondrial genome is a 16,575-bp-long circular molecule that consists of 37 genes that are typically found in other vertebrates. And the basic characteristics of the C trifasciata mitochondrial genome were also determined. Moreover, a comparison of C trifasciata with Cuora cyclornata, Cuora pani and Cuora aurocapitata indicated that the four mitogenomics differed in length, codons, overlaps, 13 protein-coding genes (PCGs), ND3, rRNA genes, control region, and other aspects. Phylogenetic analysis with Bayesian inference and maximum likelihood based on 12 protein-coding genes of the genus Cuora indicated the phylogenetic position of C trifasciata within Cuora. The phylogenetic analysis also showed that C trifasciata from Vietnam and China formed separate monophyletic clades with different Cuora species. The results of nucleotide base compositions, protein-coding genes and phylogenetic analysis showed that C trifasciata from these two countries may represent different Cuora species. (C) 2014 Elsevier B.V. All rights reserved.

分类号： R394

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