Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution

文献类型： 外文期刊

第一作者： Cui, Licao

作者： Cui, Licao;Feng, Kewei;Deng, Pingchuan;Du, Xianghong;Song Weining;Nie, Xiaojun;Wang, Mengxing;Cui, Licao;Feng, Kewei;Deng, Pingchuan;Du, Xianghong;Song Weining;Nie, Xiaojun;Wan, Fanghao

作者机构：

关键词： Comparative genomics;Chloroplast;Asteraceae family;RNA editing;Molecular evolution

期刊名称：PLANT MOLECULAR BIOLOGY REPORTER （ 影响因子：1.595； 五年影响因子：2.042 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Comparative chloroplast genome analysis presents new opportunities for performing molecular phylogeny studies and revealing the significant evolutionary features in higher plants, which has been widely documented from conifers to grass family. However, a systematic analysis of chloroplast genomes in Asteraceae family has not been conducted up to now. In this study, we compared and analyzed the gene content, genomic organization, and RNA editing sites of eight representative Asteraceae chloroplast genomes. Results showed that Asteraceae chloroplast had relatively conservative gene content. No gain or loss events occurred in the protein-coding genes, while some differences were found to be present in the gene structure and transfer RNA (tRNA) abundance. Genome structure analysis found some Asteraceae-specific or species-specific structure variations, and sequence rearrangement events were present in these genomes, suggesting specific evolutionary processes have occurred in this family. Some DNA regions containing parsimony-informative characters higher than 5 % were also identified, which could be used as the new molecular markers for phylogenetic analysis and plant identification of Asteraceae species. Furthermore, RNA editing in these genomes was investigated through computational analysis, and some species-specific sites were identified. Finally, phylogenetic analysis of 81 genes from 70 species supported the monophyly of the Asteraceae. Our study for the first time compared the organization, structure, and sequence divergence of eight Asteraceae chloroplast genomes, which will provide the valuable resource for molecular phylogeny of Asteraceae species and also facilitate the genetic and evolutionary studies in this family.

分类号： Q94`Q7

  • 相关文献

[1]Identification of RNA editing sites in cotton (Gossypium hirsutum) chloroplasts and editing events that affect secondary and three-dimensional protein structures. Y. Jiang,S.L. Fan,M.Z. Song,J.N. Yu,S.X. Yu. 2012

[2]A novel tetratricopeptide repeat protein, WHITE TO GREEN1, is required for early chloroplast development and affects RNA editing in chloroplasts. Ma, Fei,Hu, Yingchun,Ju, Yan,Jiang, Qianru,Zhang, Quan,Sodmergen,Cheng, Zhijun. 2017

[3]Genotyping and Bio-Sensing Chemosensory Proteins in Insects. Liu, Guoxia,Picimbon, Jean-Francois,Arnaud, Philippe,Offmann, Bernard,Picimbon, Jean-Francois. 2017

[4]Recent insertion of a 52-kb mitochondrial DNA segment in the wheat lineage. Kong, Xiuying,Zhang, Juncheng,Jia, Jizeng,Kong, Xiuying,Breen, James.

[5]RNA editing events in mitochondrial genes by ultra-deep sequencing methods: a comparison of cytoplasmic male sterile, fertile and restored genotypes in cotton. Suzuki, Hideaki,Yu, Jiwen,O'Connell, Mary A.,Zhang, Jinfa,Suzuki, Hideaki,Ness, Scott A..

[6]Kinetic analysis of RNA editing of Newcastle disease virus P gene in the early period of infection. Qiu, X.,Fu, Q.,Meng, C.,Yu, S.,Zhan, Y.,Dong, L.,Ren, T.,Sun, Y.,Tan, L.,Song, C.,Han, X.,Ding, C.,Ding, C..

[7]OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice. Tang, Jianpeng,Zhang, Wenwei,Wen, Kai,Chen, Gaoming,Sun, Juan,Tian, Yunlu,Tang, Weijie,Yu, Jun,An, Hongzhou,Wu, Tingting,Kong, Fei,Wang, Chunming,Wan, Jianmin,Tang, Jianpeng,Wang, Chunming,Wan, Jianmin,Terzaghi, William. 2017

[8]The RNA Editing Factor WSP1 Is Essential for Chloroplast Development in Rice. Zhang, Zhiguo,Cui, Xuean,Wang, Yanwei,Wu, Jinxia,Gu, Xiaofeng,Lu, Tiegang. 2017

[9]Evolution of the Aux/IAA Gene Family in Hexaploid Wheat. Qiao, Linyi,Qiao, Linyi,Zhang, Xiaojun,Li, Xin,Chang, Jianzhong,Zhan, Haixian,Guo, Huijuan,Zheng, Jun,Chang, Zhijian,Zhang, Li,Zhang, Lei.

[10]Directed evolution of a beta-galactosidase from Pyrococcus woesei resulting in increased thermostable beta-glucuronidase activity. Xiong, Ai-Sheng,Peng, Ri-He,Zhuang, Jing,Li, Xian,Xue, Yong,Liu, Jin-Ge,Gao, Feng,Cai, Bin,Chen, Jian-Min,Yao, Quan-Hong.

[11]Molecular characteristics and evolutionary analysis of a very virulent infectious bursal disease virus. Li Zan,Zhu Ping,Qi XiaoLe,Ren XianGang,Wang XiaoMei,Cui Lei,Li Zan. 2015

[12]High efficiency and throughput system in directed evolution in vitro of reporter gene. Xiong, Ai-Sheng,Peng, Ri-He,Liu, Jin-Ge,Zhuang, Jing,Qiao, Yu-Shan,Xu, Fang,Cai, Bing,Zhang, Zhen,Chen, Jian-Min,Yao, Quan-Hong.

[13]Cloning, molecular evolution and functional characterization of ZmbHLH16, the maize ortholog of OsTIP2 (OsbHLH142). Liu, Yongming,Wei, Gui,Sun, Yonghao,Lu, Yanli,Lan, Hai,Li, Chuan,Zhang, Suzhi,Cao, Moju,Liu, Yongming,Wei, Gui,Lu, Yanli,Lan, Hai,Li, Chuan,Zhang, Suzhi,Cao, Moju,Li, Jia,Sun, Yonghao. 2017

[14]Leaves of the Lamiaceae species Glechoma hederacea (ground ivy) contain a lectin that is structurally and evolutionary related to the legume lectins. Wang, WF,Peumans, WJ,Rouge, P,Rossi, C,Proost, P,Chen, JP,Van Damme, EJM. 2003

[15]Complete genome sequence of a Chinese isolate of pepper vein yellows virus and evolutionary analysis based on the CP, MP and RdRp coding regions. Liu, Xiangning,Li, Xun,Dai, Liangyin,Tang, Qianjun,Liu, Maoyan,Liu, Xiangning,Dai, Liangyin,Tang, Qianjun,Tang, Qianjun,Li, Xun,Zhang, Deyong.

[16]Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. Edmunds, Richard C.,Westerfield, Monte,Su, Baofeng,Dunham, Rex A.,Balhoff, James P.,Dahdul, Wasila M.,Lapp, Hilmar,Vision, Todd J.,Eames, B. Frank,Dahdul, Wasila M.,Mabee, Paula M.,Lundberg, John G.,Vision, Todd J.,Edmunds, Richard C.,Su, Baofeng,Balhoff, James P.,Lapp, Hilmar.

[17]Three duplication events and variable molecular evolution characteristics involved in multiple GGPS genes of six Solanaceae species. Li, Feng,Wei, Pan,Wang, Ran,Jin, Lifeng,Yang, Jun,Lin, Fucheng,Luo, Zhaopeng,Wei, Chunyang,Qiao, Chan,Chen, Zhenxi,Wang, Peng.

[18]Comprehensive molecular evolution and gene expression analyses of the ABC1 atypical kinase family in rice and Arabidopsis. Gao, Qingsong,Luo, Yuming,Yang, Liming,Zang, Hui,Gao, Yun,Yang, Zefeng,Zhou, Yong,Yuan, Yuan,Wang, Yifan,Xu, Xing,Xu, Chenwu,Liang, Guohua,Wang, Jun.

[19]The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis. Zhang, Hai-Bin,Li, Kui,Zhang, Qun-Jie,Zhang, Yun,Liu, Yuan,Zhu, Ting,Li, Wei,Huang, Hui,Tong, Yan,Nan, Hong,Shi, Cong,Shi, Chao,Jiang, Jian-Jun,Mao, Shu-Yan,Jiao, Jun-Ying,Zhang, Dan,Zhao, You-Jie,Zhang, Li-Ping,Liu, Yun-Long,Gao, Li-Zhi,Xia, En-Hua,Zhang, Hai-Bin,Li, Kui,Liu, Yuan,Li, Wei,Huang, Hui,Shi, Chao,Jiang, Jian-Jun,Zhang, Dan,Gao, Li-Zhi,Xia, En-Hua,Nan, Hong,Shi, Cong,Sheng, Jun,Zhao, Yuan,Zhang, Qun-Jie,Kim, Changhoon,Yu, Yue,Zhu, Ting,Liu, Ben-Ying,Shao, Sheng-Fu,Ni, De-Jiang,Eichler, Evan E.. 2017

[20]Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics. Zhang, Xian,Liu, Xueduan,Dong, Weiling,Yin, Huaqun,Zhang, Xian,Liu, Xueduan,Yin, Huaqun,He, Qiang,Zhang, Xiaoxia,Fan, Fenliang,Peng, Deliang,Huang, Wenkun. 2016

作者其他论文 更多>>

微信小程序