Sympatric speciation of spiny mice, Acomys, unfolded transcriptomically at Evolution Canyon, Israel

文献类型： 外文期刊

第一作者： Li, Kexin

作者： Li, Kexin;Wang, Huihua;Li, Kexin;Lovy, Matej;Nevo, Eviatar;Cai, Zhenyuan;Wang, Liuyang;Xu, Qinqin;Lovy, Matej;Wang, Zhenlong

作者机构：

关键词： adaptive ecological speciation;microclimate;natural selection;RNA-seq

期刊名称：PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA （ 影响因子：11.205； 五年影响因子：12.291 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Spiny mice, Acomys cahirinus, colonized Israel 30,000 y ago from dry tropical Africa and inhabited rocky habitats across Israel. Earlier, we had shown by mtDNA that A. cahirinus incipiently sym-patrically speciates at Evolution Canyon I (EC I) in Mount Carmel, Israel because of microclimatic interslope divergence. The EC I microsite consists of a dry and hot savannoid "African" slope (AS) and an abutting humid and cool-forested "European" slope (ES). Here, we substantiate incipient SS in A. cahirinus at EC I based on the entire transcriptome, showing that multiple slope-specific adaptive complexes across the transcriptome result in two divergent clusters. Tajima's D distribution of the abutting Acomys interslope populations shows that the ES population is under stronger positive selection, whereas the AS population is under balancing selection, harboring higher genetic polymorphisms. Considerable sites of the two populations were differentiated with a coefficient of F-ST = 0.25-0.75. Remarkably, 24 and 37 putatively adaptively selected genes were detected in the AS and ES populations, respectively. The AS genes involved DNA repair, growth arrest, neural cell differentiation, and heat-shock proteins adapting to the local AS stresses of high solar radiation, drought, and high temperature. In contrast, the ES genes involved high ATP associated with energetics stress. The sharp ecological interslope divergence led to strong slope-specific selection overruling the interslope gene flow. Earlier tests suggested slope-specific mate choice. Habitat interslope-adaptive selection across the transcriptome and mate choice substantiate sympatric speciation (SS), suggesting its prevalence at EC I and commonality in nature.

分类号： N

  • 相关文献

[1]Development and test verification of air temperature model for Chinese solar and Spainish Almeria-type greenhouses. Antonio Sanchez-Molina, Jorge,Rodriguez, Francisco,Luis Guzman, Jose,Wang Hui,Li Ming,Wang Hui,Yang Xinting. 2017

[2]Transpiration rates of urban trees, Aesculus chinensis. Wang, Hua,Wang, Xiaoke,Zheng, Hua,Ren, Yufen,Ouyang, Zhiyun,Wang, Hua,Zhao, Ping,Gao, Fuyuan.

[3]Life stages of an aphid living under similar thermal conditions differ in thermal performance. Xing, Kun,Zhao, Fei,Ma, Chun-sen,Hoffmann, Ary A..

[4]SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors. Chen, Liang,Sun, Daokun,Peng, Junhua,Ren, Jing,You, Frank M.,Wang, Jirui,Luo, Ming-Cheng,You, Frank M.,Peng, Yunliang,Nevo, Eviatar,Beiles, Avigdor,Sun, Dongfa,Peng, Junhua. 2013

[5]Non-uniqueness of factors constraint on the codon usage in Bombyx mori. Jia, Xian,Zheng, Hao,Qi, Qi,Wei, Lei,Sun, Jingchen,Jia, Xian,Zheng, Hao,Qi, Qi,Wei, Lei,Sun, Jingchen,Liu, Shuyu,He, Jian,Li, Bo,Zhao, Taiyi. 2015

[6]The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern. Liu, Yong-sheng,Zhou, Jian-hua,Chen, Hao-tai,Ma, Li-na,Ding, Yao-zhong,Zhang, Jie,Pejsak, Zygmunt.

[7]Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing. Li, Yan,Otecko, Newton O.,Liu, He-Qun,Wang, Ming-Shan,Irwin, David M.,Peng, Ming-Sheng,Wu, Dong-Dong,Zhang, Ya-Ping,Zeng, Lin,Su, Ling-Yan,Otecko, Newton O.,Liu, He-Qun,Wang, Ming-Shan,Peng, Ming-Sheng,Wu, Dong-Dong,Zhang, Ya-Ping,Ming, Chen,Li, Hai-Peng,Ming, Chen,Li, Yan,Zhang, Ya-Ping,Li, Yan,Yao, Yong-Gang,Su, Yan-Hua,Otecko, Newton O.,Peng, Ming-Sheng,Wu, Dong-Dong,Dalecky, Ambroise,Dalecky, Ambroise,Aplin, Ken,Donnellan, Stephen,Aplin, Ken,Liu, Xiao-Hui,Song, Ying,Zhang, Zhi-Bin,Esmailizadeh, Ali,Sohrabi, Saeed S.,Nanaei, Hojjat Asadollahpour,Atteynine, Solimane Ag,Atteynine, Solimane Ag,Rocamora, Gerard,Brescia, Fabrice,Morand, Serge,Irwin, David M.. 2018

[8]Transcriptome, genetic editing, and microRNA divergence substantiate sympatric speciation of blind mole rat, Spalax. Li, Kexin,Wang, Huihua,Li, Kexin,Zhao, Yang,Frenkel, Zeev,Beiles, Avigdor,Nevo, Eviatar,Wang, Liuyang,Levanon, Erez Y.,Bazak, Lily,Buchumenski, Ilana,Xu, Qinqin,Frenkel-Morgenstern, Milana,Tagore, Satabdi,Fang, Xiaodong,Lovy, Matej,Li, Xiangfeng,Bin Cao, Yi,Wang, Zhen Long.

[9]Low genetic diversity and local adaptive divergence of Dracaena cambodiana (Liliaceae) populations associated with historical population bottlenecks and natural selection: An endangered long-lived tree endemic to Hainan Island, China. Zheng, D. -J.,Xie, L. -S.,Zhang, Z. -L.,Zheng, D. -J.,Zhu, J. -H.,Zhang, Z. -L..

[10]Characterization of the porcine epidemic diarrhea virus codon usage bias. Chen, Ye,Shi, Yuzhen,Deng, Hongjuan,Gu, Ting,Xu, Jian,Ou, Jinxin,Jiang, Zhiguo,Jiao, Yiren,Zou, Tan,Wang, Chong.

[11]Genome-wide characterization of differentially expressed genes provides insights into regulatory network of heat stress response in radish (Raphanus sativus L.). Wang, Ronghua,Xu, Liang,Wang, Yan,Liu, Liwang,Wang, Ronghua,Mei, Yi,Guo, Jun,Zhu, Xianwen. 2018

[12]Transcriptome Analysis of Sucrose Metabolism during Bulb Swelling and Development in Onion (Allium cepa L.). Zhang, Chunsha,Zhang, Hongwei,Liang, Yi,Zhan, Zongxiang,Liu, Bingjiang,Chen, Zhentai. 2016

[13]Expression profiles of a cytoplasmic male sterile line of Gossypium harknessii and its fertility restorer and maintainer lines revealed by RNA-Seq. Han, Zongfu,Deng, Yongsheng,Kong, Fanjin,Wang, Zongwen,Shen, Guifang,Wang, Jinghui,Duan, Bing,Li, Ruzhong,Qin, Yuxiang. 2017

[14]Transcriptome and Differential Expression Profiling Analysis of the Mechanism of Ca2+ Regulation in Peanut (Arachis hypogaea) Pod Development. Yang, Sha,Zhang, Jialei,Geng, Yun,Guo, Feng,Meng, Jingjing,Li, Xinguo,Li, Lin,Wang, Jianguo,Sui, Na,Wan, Shubo. 2017

[15]Genome-wide comparative transcriptome analysis of CMS-D2 and its maintainer and restorer lines in upland cotton. Jianyong Wu,Wu, Jianyong,Xing, Chaozhu,Meng Zhang,Bingbing Zhang,Xuexian Zhang,Liping Guo,Tingxiang Qi,Hailin Wang,Jinfa Zhang,Chaozhu Xing. 2017

[16]Early Transcriptomic Adaptation to Na2CO3 Stress Altered the Expression of a Quarter of the Total Genes in the Maize Genome and Exhibited Shared and Distinctive Profiles with NaCl and High pH Stresses. Zhang, Li-Min,Liu, Xiang-Guo,Han, Si-Ping,Hao, Dong-Yun,Zhang, Li-Min,Qu, Xin-Ning,Yu, Ying,Dou, Yao,Xu, Yao-Yao,Hao, Dong-Yun,Zhang, Li-Min,Jing, Hai-Chun. 2013

[17]Uncovering Male Fertility Transition Responsive miRNA in a Wheat Photo-Thermosensitive Genic Male Sterile Line by Deep Sequencing and Degradome Analysis. Bai, Jian-Fang,Wang, Yu-Kun,Wang, Peng,Duan, Wen-Jing,Yuan, Shao-Hua,Sun, Hui,Yuan, Guo-Liang,Ma, Jing-Xiu,Wang, Na,Zhang, Feng-Ting,Zhang, Li-Ping,Zhao, Chang-Ping,Bai, Jian-Fang,Wang, Yu-Kun,Wang, Peng,Duan, Wen-Jing,Yuan, Shao-Hua,Sun, Hui,Yuan, Guo-Liang,Ma, Jing-Xiu,Wang, Na,Zhang, Feng-Ting,Zhang, Li-Ping,Zhao, Chang-Ping,Wang, Peng,Duan, Wen-Jing. 2017

[18]De novo assembly of pen shell (Atrina pectinata) transcriptome and screening of its genic microsatellites. Sun, Xiujun,Li, Dongming,Liu, Zhihong,Zhou, Liqing,Wu, Biao,Yang, Aiguo,Sun, Xiujun,Li, Dongming,Liu, Zhihong,Zhou, Liqing,Wu, Biao,Yang, Aiguo. 2017

[19]A Novel AP2/ERF Transcription Factor CR1 Regulates the Accumulation of Vindoline and Serpentine in Catharanthus roseus. Gao, Fangyuan,Ren, Juansheng,Lu, Xianjun,Ren, Guangjun,Wang, Rui. 2017

[20]RNA-Seq Analyses for Two Silkworm Strains Reveals Insight into Their Susceptibility and Resistance to Beauveria bassiana Infection. Xing, Dongxu,Jiang, Liang,Xia, Qingyou,Xing, Dongxu,Yang, Qiong,Li, Qingrong,Xiao, Yang,Ye, Mingqiang. 2017

作者其他论文 更多>>

微信小程序