Genome-wide computational analysis of the dirigent gene family in Solanum lycopersicum

文献类型： 外文期刊

第一作者： Saddique, Muhammad Abu Bakar

作者： Saddique, Muhammad Abu Bakar;Guan, Ge;Hu, Beibei;Hussain, Zahid;Luo, Xiumei;Ren, Maozhi;Guan, Ge;Hu, Beibei;Luo, Xiumei;Ren, Maozhi;Khan, Mudassir;Amjad, Muhammad Dawood;Abbas, Sana;Maqsood, Muhammad Faizan Khurram;Saddique, Muhammad Abu Bakar

作者机构：

关键词： Dirigent (DIR); Solanum lycopersicum; Genome-wide analysis; Bioinformatics

期刊名称：PROTEOME SCIENCE （ 影响因子：1.6； 五年影响因子：1.8 ）

ISSN：

年卷期： 2024 年 22 卷 1 期

页码：

收录情况： SCI

摘要： BackgroundDirigent (DIR) genes play a key role in the development of organic products in plants. They confer conformational influence on processes that lack stereoselectivity and regioselectivity through processes that are mostly understood. They are required to produce lignans, which are a unique and widely distributed family of plant secondary metabolites with intriguing pharmacological characteristics and potential role in plant development. DIR genes are implicated in the process of lignification and protect plants from environmental stresses, including biotic and abiotic stresses. Nevertheless, no research has been performed on the DIR gene family in Solanum lycopersicum. This study provides detailed information on the DIR gene family in S. lycopersicum.Methods and resultsThe conserved domain analysis, phylogenetic analysis, evolutionary adaptation, cis-acting elements, proteomic analysis, signal peptide detection, transmembrane potential analysis, sequence identity and similarity analysis, gene assembly, genomic localization, duplication of gene analysis, and evolutionary linkage of 31 potential DIR genes were studied. All these analyses provide a deep understanding of DIR genes in the S. lycopersicum genome that will provide a useful reference for further functional analysis of the DIR genes in S. lycopersicum.ConclusionThis research provides an in-depth and comprehensive explanation of the detailed process and structural characterization of DIR genes in the genome of S. lycopersicum, laying the groundwork for future plant genetic engineering and crop development exploration. This work will provide valuable information for identifying DIR genes in higher plants and support future research on the DIR gene family.

分类号：

  • 相关文献
作者其他论文 更多>>
  • From Taxus to paclitaxel: Opportunities and challenges for urban agriculture to promote human health

    作者：Xie, Xiulan;Cheng, Hao;Ren, Maozhi;Xie, Xiulan;Cheng, Hao;Ren, Maozhi;Xie, Xiulan;Zhai, Yaohua;Ren, Maozhi;Wei, Wen-Hua

    关键词：Adventitious roots; Paclitaxel biosynthesis; Synthesis strategy; Synthetic biology; Taxus x media; Urban agriculture

  • Antibacterial Mechanism and Flavour Impact of Ultrasound and Plasma-Activated Water Combination on Aeromonas veronii in Crayfish

    作者：Xu, Weicheng;Deng, Ziai;Liu, Yi;Cheng, Hao;Ren, Maozhi;Xu, Weicheng;Qin, Zhanke;Deng, Ziai;Liu, Yi;Zhang, Haojie;Cheng, Hao;Ren, Maozhi;Sun, Rongxue;Jiang, Ning;Luo, Haibo

    关键词：A. veronii; food microbiology; sterilisation mechanism; disinfection; spoilage organisms; food safety

  • Transcriptomic and morphologic vascular aberrations underlying FCDIIb etiology

    作者：Fang, Chuantao;Sun, Licheng;Lu, Yujia;Guo, Jingjing;Mei, Xinyu;Qi, Dashi;Fang, Chuantao;Zhang, Xiaodan;Yang, Lin;Wang, Min;Tan, Yanfeng;Zhang, Jinsen;Liu, Guoping;Zhang, Fayong;Zhao, Rui;Qi, Dashi;Fang, Chuantao;Zhang, Xiaodan;Yang, Lin;Wang, Min;Tan, Yanfeng;Zhang, Jinsen;Liu, Guoping;Zhang, Fayong;Zhao, Rui;Qi, Dashi;Fang, Chuantao;Zhang, Xiaodan;Yang, Lin;Wang, Min;Tan, Yanfeng;Zhang, Jinsen;Liu, Guoping;Zhang, Fayong;Zhao, Rui;Qi, Dashi;Fang, Chuantao;Liu, Yi;Xiao, Jianbo;Gao, Xin;Zhu, Li;Ren, Maozhi;Ma, Shaojie;Zhao, Rui;Zhao, Rui

    关键词：

  • Innovative Strategies for Plant Protection: The Combination of Spray-Induced Gene Silencing and Nanotechnology

    作者：Xi, Yitao;Akram, Sawera;Yang, Xinyi;Hu, Beibei;Saddique, Muhammad Abu Bakar;Guan, Ge;Luo, Xiumei;Ren, Maozhi;Hu, Beibei;Guan, Ge;Ren, Maozhi;Tian, Donglan;Luo, Xiumei;Ren, Maozhi

    关键词：RNA interference; spray-induced gene silencing; nanotechnology; cross-kingdom RNAi; plant protection

  • Astaxanthin biosynthesis for functional food development and space missions

    作者：Xie, Xiulan;Zhong, Moyu;Huang, Xinxin;Yuan, Xinrui;Ren, Maozhi;Huang, Xinxin;Ren, Maozhi;Mahna, Nasser;Mussagy, Cassamo Ussemane

    关键词：Astaxanthin; microalgae; Haematococcuspluvialis; synthetic biology; cell factory; genetic engineering; human health; space exploration

  • OsEPSPS Balances Disease Resistance and Plant Growth

    作者：He, Kaiwei;Xu, Liting;Zhu, Xiaobo;Zhang, Wei;Ren, Lifen;Liu, Yuchen;Guo, Chunyu;Ma, Yahuan;Yi, Qian;Xu, Yingzhi;Yin, Junjie;Song, Li;Lu, Xiang;Tang, Yongyan;He, Min;Chen, Xuewei;Li, Weitao;Luo, Xiumei;Zou, Lijuan

    关键词：EPSPS; growth; Magnaporthe oryzae; nicotinamide mononucleotide; resistance; shikimate; trigonelline

  • Microalgae: A good carrier for biological selenium enrichment

    作者：Liu, Shuang;Saddique, Muhammad Abu Bakar;Liang, Yiming;Guan, Ge;Su, Haotian;Hu, Beibei;Luo, Xiumei;Ren, Maozhi;Liu, Shuang;Saddique, Muhammad Abu Bakar;Liang, Yiming;Guan, Ge;Su, Haotian;Hu, Beibei;Luo, Xiumei;Ren, Maozhi;Guan, Ge;Su, Haotian;Hu, Beibei;Ren, Maozhi;Yang, Songqi

    关键词：Selenium-rich microalgae; Selenium metabolism; Selenoproteins; Nano-selenium

微信小程序