Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes

文献类型： 外文期刊

第一作者： Chen, Zhiwen

作者： Chen, Zhiwen;Nie, Hushuai;Pei, Haili;Li, Shuangshuang;Hua, Jinping;Wang, Yumei;Zhang, Lida

作者机构：

关键词： Mitochondrial genomes;Comparative genomics;Multiple DNA rearrangement;Unique segments;Repeat sequences;Gossypium

期刊名称：BMC GENOMICS （ 影响因子：3.969； 五年影响因子：4.478 ）

ISSN： 1471-2164

年卷期： 2017 年 18 卷

页码：

收录情况： SCI

摘要： Background: Cotton (Gossypium spp.) is commonly grouped into eight diploid genomic groups and an allotetraploid genomic group, AD. The mitochondrial genomes supply new information to understand both the evolution process and the mechanism of cytoplasmic male sterility. Based on previously released mitochondrial genomes of G. hirsutum (AD(1)), G. barbadense (AD(2)), G. raimondii (D-5) and G. arboreum (A(2)), together with data of six other mitochondrial genomes, to elucidate the evolution and diversity of mitochondrial genomes within Gossypium. Results: Six Gossypium mitochondrial genomes, including three diploid species from D and three allotetraploid species from AD genome groups (G. thurberi D-1, G. davidsonii D3-d and G. trilobum D-8; G. tomentosum AD(3), G. mustelinum AD(4) and G. darwinii AD(5)), were assembled as the single circular molecules of lengths about 644 kb in diploid species and 677 kb in allotetraploid species, respectively. The genomic structures of mitochondrial in D group species were identical but differed from the mitogenome of G. arboreum (A2), as well as from the mitogenomes of five species of the AD group. There mainly existed four or six large repeats in the mitogenomes of the A + AD or D group species, respectively. These variations in repeat sequences caused the major inversions and translocations within the mitochondrial genome. The mitochondrial genome complexity in Gossypium presented eight unique segments in D group species, three specific fragments in A + AD group species and a large segment (more than 11 kb) in diploid species. These insertions or deletions were most probably generated from crossovers between repetitive or homologous regions. Unlike the highly variable genome structure, evolutionary distance of mitochondrial genes was 1/6th the frequency of that in chloroplast genes of Gossypium. RNA editing events were conserved in cotton mitochondrial genes. We confirmed two near full length of the integration of the mitochondrial genome into chromosome 1 of G. raimondii and chromosome A03 of G. hirsutum, respectively, with insertion time less than 1.03 MYA. Conclusion: Ten Gossypium mitochondrial sequences highlight the insights to the evolution of cotton mitogenomes.

分类号：

  • 相关文献

[1]QTL mapping for fiber quality traits across multiple generations and environments in upland cotton. Fu-Ding Sun,Jian-Hong Zhang,Shu-Fang Wang,Wan-Kui Gong,Yu-Zhen Shi,Ai-Ying Liu,Jun-Wen Li,Ju-Wu Gong,Hai-Hong Shang,You-Lu Yuan.

[2]Synonymous codon usage patterns in different parasitic platyhelminth mitochondrial genomes. Chen, L.,Yang, D. Y.,Nong, X.,Huang, X.,Xie, Y.,Fu, Y.,Zheng, W. P.,Zhang, R. H.,Wu, X. H.,Gu, X. B.,Wang, S. X.,Yang, G. Y.,Liu, T. F.,Peng, X. R.. 2013

[3]Next-Generation Sequencing of Two Mitochondrial Genomes from Family Pompilidae (Hymenoptera: Vespoidea) Reveal Novel Patterns of Gene Arrangement. Chen, Peng-Yan,Zheng, Bo-Ying,Wei, Shu-Jun,Chen, Peng-Yan,Liu, Jing-Xian. 2016

[4]Genome-Wide Analysis of the Sus Gene Family in Cotton. Changsong Zou,Cairui Lu,Haihong Shang,Xinrui Jing,Hailiang Cheng,Youping Zhang,Guoli Song. 2013

[5]Molecular characterization of a transcriptionally active Ty1/copia-like retrotransposon in Gossypium. Yuefen Cao,Yurong Jiang,Mingquan Ding,Shae He,Hua Zhang,Lifeng Lin,Junkang Rong.

[6]Characterization and development of chloroplast microsatellite markers for Gossypium hirsutum, and cross-species amplification in other Gossypium species. Cai, X. Y.,Liu, F.,Zhou, Z. L.,Wang, X. X.,Wang, C. Y.,Wang, Y. H.,Wang, K. B.. 2015

[7]Mapping QTLs for drought tolerance in an F-2:3 population from an inter-specific cross between Gossypium tomentosum and Gossypium hirsutum. J.Y. Zheng,G. Oluoch,M.K. Riaz Khan,X.X. Wang,X.Y. Cai,Z.L. Zhou,C.Y. Wang,Y.H. Wang,X.Y. Li,F. Liu,K.B. Wang. 2016

[8]Genome-wide characterization and comparative analysis of the MLO gene family in cotton. Xiaoyan Wang,Qifeng Ma,Lingling Dou,Zhen Liu,Renhai Peng,Shuxun Yu. 2016

[9]A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons. Yuling Liu,Renhai Peng,Fang Liu,Xingxing Wang,Xinglei Cui,Zhongli Zhou,Chunying Wang,Xiaoyan Cai,Yuhong Wang,Zhongxu Lin,Kunbo Wang. 2016

[10]Development of EST-SSR markers related to salt tolerance and their application in genetic diversity and evolution analysis in Gossypium. B.H. Wang,P. Zhu,Y.L. Yuan,C.B. Wang,C.M. Yu,H.H. Zhang,X.Y. Zhu,W. Wang,C.B. Yao,Z.M. Zhuang,P. Li. 2014

[11]Induction of cotton ovule culture fibre branching by co-expression of cotton BTL, cotton SIM, and Arabidopsis STI genes. Gaskin Wang,Hongjie Feng,Junling Sun,Xiongming Du. 2013

[12]Cytoplasmic diversity of the cotton genus as revealed by chloroplast microsatellite markers. Li, Pengbo,Hua, Jinping,Li, Pengbo,Liu, Huimin,Li, Zhaohu,Hua, Jinping. 2014

[13]Development of EST-SSR markers related to disease resistance and their application in genetic diversity and evolution analysis in Gossypium. Wang, B. H.,Rong, P.,Cai, X. X.,Zhu, X. Y.,Chen, C. J.,Xu, Y. Y.,Huang, X. J.,Zhuang, Z. M.,Wang, C. B.,Wang, C. B.,Wang, W.. 2015

[14]Construction and initial analysis of five Fosmid libraries of mitochondrial genomes of cotton (Gossypium). Li ShuangShuang,Liu GuoZheng,Chen ZhiWen,Li PengBo,Hua JinPing,Wang YuMei,Li PengBo. 2013

[15]Comparative flight performance of three important pest Adelphocoris species of Bt cotton in China. Wu, K. M.,Guo, Y. Y.,Wyckhuys, K. A. G..

[16]SnRK2 Homologs in Gossypium and GhSnRK2.6 Improved Salt Tolerance in Transgenic Upland Cotton and Arabidopsis. Su, Ying,Zhen, Junbo,Zhang, Xi,Chen, Zhiwen,Li, Le,Hua, Jinping,Wang, Yumei,Zhen, Junbo,Huang, Yi.

[17]Identification and expression analysis of group III WRKY transcription factors in cotton. DOU Ling-ling,GUO Ya-ning,Ondati Evans,PANG Chao-you,WEI Heng-ling,SONG Mei-zhen,FAN Shu-li,YU Shu-xun. 2016

[18]Molecular evolution of the plastid genome during diversification of the cotton genus. Zhiwen Chen,Hua, Jinping,Wendel, Jonathan F.,Corrinne E. Grover,Pengbo Li,Yumei Wang,Hushuai Nie,Yanpeng Zhao,Meiyan Wang,Fang Liu,Zhongli Zhou,Xingxing Wang,Xiaoyan Cai,Kunbo Wang,Jonathan F. Wendel,Jinping Hua.

[19]Creation of the technique of interspecific hybridization for breeding in cotton. Liang, ZL,Jiang, RQ,Zhong, WN,He, JX,Sun, CW,Qou, ZJ,Liu, DL,Zhang, XX,Zhao, GZ,Niu, YZ,Wang, JD,Wang, Y,Liang, LM,Wang, LM. 2002

[20]Gbvdr6, a Gene Encoding a Receptor-Like Protein of Cotton (Gossypium barbadense), Confers Resistance to Verticillium Wilt in Arabidopsis and Upland Cotton. Yang, Yuwen,Ma, Zhengqiang,Yang, Yuwen,Ma, Zhengqiang,Yang, Yuwen,Chen, Tianzi,Ling, Xitie. 2018

作者其他论文 更多>>

微信小程序