An Integrated Quantitative Trait Locus Map of Oil Content in Soybean, Glycine max (L.) Merr., Generated Using a Meta-Analysis Method for Mining Genes

文献类型： 外文期刊

第一作者： Han Xue

作者： Han Xue;Liu Chun-yan;Jiang Hong-wei;Hu Guo-hua;Qi Zhao-ming;Sun Ya-nan;Wu Qiong;Du Xiang-yu;Liu Chun-yan;Chen Qing-shan;Shan Da-peng

作者机构：

关键词： soybean;oil content;meta-analysis;consensus QTL;gene ontology (GO)

期刊名称：AGRICULTURAL SCIENCES IN CHINA （ 影响因子：0.82； 五年影响因子：0.997 ）

ISSN： 1671-2927

年卷期： 2011 年 10 卷 11 期

页码：

收录情况： SCI

摘要： Soybean is a major cash crop in the world, and its oil content was one of the very important traits. Therefore, the study of gene mapping for oil content in soybean is very important for breeding application. At present, at least 130 QTL loci for soybean oil content have been published; however, the mapping results of oil content were dispersed and a coalescent public map should be established to integrate the published QTLs, and to more efficiently mine genes based on the meta-analysis method of the bioinformatics tools. This study was to construct an integrated map of QTLs for soybean oil content and accelerate the application of bioinformation resource related to oil content improvement in the practice of soybean breeding. We collected information of 130 QTLs reported over the past 20 yr for soybean oil content and used the Software BioMercator 2.1 to project QTLs from their own maps onto a reference map, which was an early-integrated map constructed by Song (2004) for oil-content quantitative trait loci (QTLs) in soybean. Gene mining was performed based on the meta-analysis by running the local ver. GENSCAN and InterProScan. The confidence interval of QTLs was efficaciously narrowed using the meta-analysis method, and 25 consensus QTLs were mapped on the reference map. Using a local version of GENSCAN, 12 805 sequences in the consensus QTL intervals were predicted. With BLAST, these predicted sequences were aligned to gene sequences from the International Protein Index database using InterProScan locally. Thirteen predicted genes were in the class of the geme ontology (GO) accession (0006631), which were involved in the fatty acid metabolic process. These genes were analyzed using BLAST at the NCBI website to examine whether they were related to oil content. Six genes were found in the oil-synthesis pathway. Twenty-five consensus QTLs and six genes were found in the oil-synthesis pathway. These results would lay the foundation for marker-assisted selection and mapping QTL precisely, and these genes will facilitate the researches on the gene mining of oil synthesis and molecular breeding in soybean.

分类号：

  • 相关文献

[1]Meta-analysis and candidate gene mining of low-phosphorus tolerance in maize. Zhang, Hongwei,Uddin, Mohammed Shalim,Zou, Cheng,Xie, Chuanxiao,Xu, Yunbi,Li, Wen-Xue,Uddin, Mohammed Shalim,Xu, Yunbi. 2014

[2]Combining QTL and candidate gene analysis with phenotypic model to unravel the relationship between lodging and related traits in soybean. Chen, Haifeng,Yang, Zhonglu,Chen, Limiao,Zhang, Chanjuan,Yuan, Songli,Zhang, Xiaojuan,Qiu, Dezhen,Wan, Qiao,Chen, Shuilian,Shan, Zhihui,Zhou, Xinan,Zhan, Yong.

[3]Identification of loci contributing to maize drought tolerance in a genome-wide association study. Wang, Nan,Lv, Xiang-ling,Li, Feng-hai,Wang, Zhen-ping,Jiang, Li-yan,Liang, Xiao-ling,Yang, Jie,Wang, Nan,Wang, Zhen-ping,Weng, Jian-feng,Zhang, De-gui,Yong, Hong-jun,Li, Ming-shun,Zhang, Shi-huang,Hao, Zhuan-fang,Li, Xin-hai.

[4]Mining for low-nitrogen tolerance genes by integrating meta-analysis and large-scale gene expression data from maize. Liu, Hailan,Su Shunzong,Zhang, Suzhi,Wu, Ling,Liu, Dan,Gao, Shibin,Luo, Bowen,Liu, Hailan,Su Shunzong,Zhang, Suzhi,Wu, Ling,Liu, Dan,Gao, Shibin,Tang, Haitao.

[5]Effects of specific organs on seed oil accumulation in Brassica napus L.. Liu, Jing,Hua, Wei,Yang, Hongli,Sun, Xingchao,Wang, Xinfa,Liu, Guihua,Wang, Hanzhong,Guo, Tingting.

[6]QTL mapping of kernel oil content of chromosome 6 in a high oil maize mutant (Zea mays L.). Han Jing,Wang Hongwu,Chen Shaojiang,Wang Hongwu,Han Jing.

[7]Increasing seed mass and oil content in transgenic Arabidopsis by the overexpression of wri1-like gene from Brassica napus. Liu, Jing,Hua, Wei,Zhan, Gaomiao,Wei, Fang,Wang, Xinfa,Liu, Guihua,Wang, Hanzhong.

[8]Overexpression of GhDof1 improved salt and cold tolerance and seed oil content in Gossypium hirsutum. Su, Ying,Liang, Wei,Liu, Zhengjie,Zhao, Yanpeng,Ijaz, Babar,Hua, Jinping,Wang, Yumei.

[9]Depressed expression of FAE1 and FAD2 genes modifies fatty acid profiles and storage compounds accumulation in Brassica napus seeds. Shi, Jianghua,Lang, Chunxiu,Wang, Fulin,Wu, Xuelong,Liu, Renhu,Zheng, Tao,Chen, Jinqing,Wu, Guanting,Zhang, Dongqing.

[10]Genetic analysis and QTL mapping of oil content and seed index using two recombinant inbred lines and two backcross populations in Upland cotton. Shang, Lianguang,Abduweli, Abdugheni,Hua, Jinping,Wang, Yumei.

[11]Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). Pandey, Manish K.,Qiao, Lixian,Feng, Suping,Khera, Pawan,Wang, Hui,Guo, Baozhu,Pandey, Manish K.,Khera, Pawan,Varshney, Rajeev K.,Pandey, Manish K.,Qiao, Lixian,Feng, Suping,Khera, Pawan,Wang, Hui,Culbreath, Albert K.,Guo, Baozhu,Wang, Ming Li,Tonnis, Brandon,Barkley, Noelle A.,Qiao, Lixian,Feng, Suping,Wang, Hui,Wang, Jianping,Holbrook, C. Corley. 2014

[12]Genetic analysis on oil content in rapeseed (Brassica napus L.). Wang, Xinfa,Liu, Guihua,Yang, Qing,Hua, Wei,Liu, Jing,Wang, Hanzhong. 2010

[13]Identification of the Relationship between Oil Body Morphology and Oil Content by Microstructure Comparison Combining with QTL Analysis in Brassica napus. Gu, Jianwei,Chao, Hongbo,Li, Maoteng,Gu, Jianwei,Xiang, Jun,Gan, Jianping,Li, Maoteng,Wang, Hao,Li, Yonghong,Li, Dianrong,Lu, Guangyuan,Zhang, Xuekun,Long, Yan. 2017

[14]Cloning and functions analysis of a pyruvate dehydrogenase kinase in Brassica napus. Hu, Zhi-Yong,Zhan, Gao-Miao,Wang, Han-Zhong,Hua, Wei,Li, Rong-Jun,Zhang, Hua-Shan. 2011

[15]Overexpression of a foxtail millet Acetyl-CoA carboxylase gene in maize increases sethoxydim resistance and oil content. Dong, Zhigang,Zhao, Huji,He, Junguang,Huai, Junling,Lin, Heng,Wang, Guoying,Dong, Zhigang,Zheng, Jun,Liu, Yunjun,Wang, Guoying. 2011

[16]Earthworms Increased Rape Seed Yield and Colza Oil. Zhang, Shu-jie,Liao, Xing,Hu, Xiao-jia,Yu, Chang-bing,Xie, Li-hua,Li, Yin-shui,Che, Zhi,Liao, Xiang-sheng. 2013

[17]Establishment and Application of Model for Determining Oil Content of Cottonseed Using Near Infrared Spectroscopy. Shang Lian-guang,Li Yu-hua,Wang Dan,Xiong Min,Hua Jin-ping,Shang Lian-guang,Li Yu-hua,Wang Dan,Xiong Min,Hua Jin-ping,Li Jun-hui,Wang Yu-mei. 2015

[18]FOURIER TRANSFORM MID-INFRARED PHOTOACOUSTIC SPECTROSCOPY (FTIR-PAS) COUPLED WITH CHEMOMETRICS FOR NON-DESTRUCTIVE DETERMINATION OF OIL CONTENT IN RAPESEED. Lu, Y.,Du, C.,Yu, C.,Zhou, J..

[19]Characterization and identification of ISSR markers associated with oil content in sea buckthorn berries. Ding, J.,Bao, Y. H.,Ding, J.,Ruan, C. J.,Li, H.,Ding, J.,Guan, Y.,Shan, J. Y.. 2016

[20]Quantitative trait loci underlying the development of seed composition in soybean (Glycine max L. Merr.). Li, Wenbin,Sun, Desheng,Du, Yuping,Chen, Qingshan,Zhang, Zhongchen,Qiu, Lijuan,Sun, Genlou.

作者其他论文 更多>>

微信小程序