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霍山石斛叶转录组中SSR位点信息分析

文献类型: 中文期刊

作者: 洪克前 1 ; 夏维丽 2 ; 李佩玲 2 ; 徐函兵 2 ; 谷会 1 ; 陈丽 1 ;

作者机构: 1.中国热带农业科学院南亚热带作物研究所/海南省热带园艺产品采后生理与保鲜重点实验室

2.信阳农林学院

关键词: 霍山石斛;转录组;多态性;SSR;标记开发

期刊名称: 中国农学通报

ISSN: 1000-6850

年卷期: 2020 年 027 期

页码: 106-110

收录情况: CSCD

摘要: 开发霍山石斛简单重复序列(SSR)分子标记,为霍山石斛遗传多样性和种质资源鉴定的研究提供技术支撑.利用Illumina HiSeq X10平台对霍山石斛叶片进行转录组测序,Microsatellite(MISA)软件分析霍山石斛转录组SSR的分布频率和重复基元的类型特征,软件Primer 5设计引物.从202080条Unigene中搜到43291个SSR位点,分布在36382条Unigene序列中,发生频率为18.00%,平均每6.08 kb含1个SSR位点,共有463种重复基元,单核苷酸重复占主要地位,发生频率为47.62%,在所有重复基元中,A/T出现频率最高(47.06%).试验共获得13960条SSR引物.

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