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Transcriptional convergence after repeated duplication of an amino acid transporter gene leads to the independent emergence of the black husk/pericarp trait in barley and rice

文献类型： 外文期刊

作者： Li, Bo 1 ; Jia, Yong 3 ; Xu, Le 4 ; Zhang, Shuo 1 ; Long, Zhoukai 4 ; Wang, Rong 4 ; Guo, Ying 1 ; Zhang, Wenying 4 ; Jiao, Chunhai 1 ; Li, Chengdao 3 ; Xu, Yanhao 1 ;

作者机构： 1.Hubei Acad Agr Sci, Food Crops Inst, Hubei Key Lab Food Crop Germplasm & Genet Improvem, Wuhan, Peoples R China

2.Hubei Acad Agr Sci, Food Crops Inst, Minist Agr & Rural Affairs Crop Mol Breeding, Key Lab, Wuhan, Peoples R China

3.Murdoch Univ, Future Food Inst, Coll Sci Hlth Engn & Educ, Western Crop Genet Alliance,Western Australian Sta, Murdoch, WA, Australia

4.Yangtze Univ, Coll Agr, Hubei Collaborat Innovat Ctr Industrializat Major, Jingzhou, Peoples R China

5.Dept Primary Ind & Reg Dev, South Perth, WA, Australia

关键词： barley; black husk/pericarp; Blp; melanin; convergent evolution; rice

期刊名称：PLANT BIOTECHNOLOGY JOURNAL （ 影响因子：13.8； 五年影响因子：13.2 ）

ISSN： 1467-7644

年卷期： 2024 年 22 卷 5 期

页码：

收录情况： SCI

摘要： The repeated emergence of the same trait (convergent evolution) in distinct species is an interesting phenomenon and manifests visibly the power of natural selection. The underlying genetic mechanisms have important implications to understand how the genome evolves under environmental challenges. In cereal crops, both rice and barley can develop black-coloured husk/pericarp due to melanin accumulation. However, it is unclear if this trait shares a common origin. Here, we fine-mapped the barley HvBlp gene controlling the black husk/pericarp trait and confirmed its function by gene silencing. The result was further supported by a yellow husk/pericarp mutant with deletion of the HvBlp gene, derived from gamma ray radiation of the wild-type W1. HvBlp encodes a putative tyrosine transporter homologous to the black husk gene OsBh4 in rice. Surprisingly, synteny and phylogenetic analyses showed that HvBlp and OsBh4 belonged to different lineages resulted from dispersed and tandem duplications, respectively, suggesting that the black husk/pericarp trait has emerged independently. The dispersed duplication (dated at 21.23 MYA) yielding HvBlp occurred exclusively in the common ancestor of Triticeae. HvBlp and OsBh4 displayed converged transcription in husk/pericarp tissues, contributing to the black husk/pericarp trait. Further transcriptome and metabolome data identified critical candidate genes and metabolites related to melanin production in barley. Taken together, our study described a compelling case of convergent evolution resulted from transcriptional convergence after repeated gene duplication, providing valuable genetic insights into phenotypic evolution. The identification of the black husk/pericarp genes in barley also has great potential in breeding for stress-resilient varieties with higher nutritional values.

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