文献类型： 外文期刊
作者： Luo, Wenlong 1 ; Yan, Jinqiang 1 ; Luo, Shanwei 1 ; Liu, Wenrui 1 ; Xie, Dasen 1 ; Jiang, Biao 1 ;
作者机构： 1.Guangdong Acad Agr Sci, Vegetable Res Inst, Guangdong Key Lab New Technol Res Vegetables, Guangzhou 510640, Peoples R China
期刊名称：SCIENTIFIC DATA （ 影响因子：9.8； 五年影响因子：10.8 ）
ISSN：
年卷期： 2023 年 10 卷 1 期
页码：
收录情况： SCI
摘要： The wax gourd (Benincasa hispida), the only species in the genus Benincasa, is an important crop native to Asia that has been widely planted for multi-purpose uses. The first wax gourd draft genome was published three years ago, but it was incomplete and highly-fragmented due to data and technical limitations. Herein, we report a new chromosome-level genome assembly and annotation of B. hispida. We generated 974.87 Mb of unitigs with N50 size of 2.43 Mb via a hybrid assembly strategy by using PacBio long reads and Illumina short reads. We then joined them into scaffolds with Hi-C data, resulting 1862 scaffolds with a total length of 975.62 Mb, and 94.92% of the length (926.05 Mb) is contained in the 12 largest scaffolds corresponding to the 12 chromosomes of B. hispida. We predicted 37,092 protein-coding genes, and 85.05% of them were functionally annotated. This chromosome-level reference genome provides significant improvement to the earlier version of draft genome and would be valuable resource for research and molecular breeding of the wax gourd.
- 相关文献
作者其他论文 更多>>
-
A nonsynonymous mutation in BhLS, encoding an acyl-CoA N-acyltransferase leads to fruit and seed size variation in wax gourd (Benincasa hispida)
作者：Yan, Jinqiang;Xie, Dasen;Wang, Yi;Wang, Min;Yang, Songguang;Jiang, Biao;Chen, Lin;Cai, Jinsen;Liu, Wenrui;Cheng, Jiaowen
关键词：
-
A QTL of eggplant shapes the rhizosphere bacterial community, co-responsible for resistance to bacterial wilt
作者：Gong, Chao;Li, Zhiliang;Sun, Baojuan;Luo, Wenlong;Luo, Shanwei;Chen, Shuting;Mai, Peiting;Li, Zhenxing;Li, Tao;Wang, Zhenshuo;Li, Ye;Wang, Yikui
关键词：
-
Excavation of Genes Response to Heat Resistance by Transcriptome Analysis in Bottle Gourd (Lagenaria siceraria (Mol.) Standl.)
作者：Wang, Min;Liu, Wenrui;Peng, Qingwu;Shi, Shaoqi;Jiang, Biao;Lin, Yu'e;Yang, Songguang;Wang, Min;Liu, Wenrui;Shi, Shaoqi;Cao, Liqin;Jiang, Biao;Zhao, Tianyue;Cui, Xiaojuan;Yang, Songguang;Wang, Ying
关键词：bottle gourd; RNA-Seq; DEGs; MAPK; bHLH; heat stress
-
Time-course transcriptome analysis of the two types of seeds provides insights into seed shape differentiation in wax gourd
作者：Luo, Chen;Yan, Jinqiang;Wang, Min;Liu, Wenrui;Xie, Dasen;Jiang, Biao;Li, Zheng
关键词：Wax gourd; Seed shape; Transcriptome; Differentially expressed genes
-
Chromosome-level genome assembly and population genomics reveals crucial selection for subgynoecy development in chieh-qua
作者：Wang, Min;Cao, Zhenqiang;Jiang, Biao;Xie, Dasen;Chen, Lin;Shi, Shaoqi;Yang, Songguang;Peng, Qingwu;Wang, Kejian;Lu, Hongwei
关键词：
-
Identification of candidate genes controlling cucumber hypocotyl elongation under low light stress based on BSA-seq and RNA-seq
作者：Chen, Lin;Meng, Haoyuan;Chen, Baoying;Xie, Shuyan;Liu, Wenrui;Wang, Min;Yan, Jinqiang;Cai, Jinsen;Yang, Songguang;Jiang, Biao;Peng, Qingwu;Lin, Yu'e
关键词：Cucumber; Hypocotyl; Low light stress; BSA-seq; RNA-seq
-
Chemical compositions and cryo-adhesive probing of the epicuticular wax crystals on fruit surface of wax gourd (Benincasa hispida)
作者：Huang, Hua;Yan, Huaxue;Yan, Jinqiang;Jiang, Biao
关键词：Wax gourd; Epicuticular wax crystals; Cryo-adhesive; Scanning electronic microscope; Gas chromatography -mass spectrometry
