Integrated Transcriptome and Proteome Analysis Revealed the Regulatory Mechanism of Hypocotyl Elongation in Pakchoi
文献类型： 外文期刊
作者： Li, Xiaofeng 1 ; Xi, Dandan 2 ; Gao, Lu 2 ; Zhu, Hongfang 2 ; Yang, Xiuke 2 ; Song, Xiaoming 4 ; Zhang, Changwei 3 ; Miao, Liming 2 ; Zhang, Dingyu 2 ; Zhang, Zhaohui 2 ; Hou, Xilin 3 ; Zhu, Yuying 2 ; Wei, Min 1 ;
作者机构： 1.Shandong Agr Univ, Coll Hort Sci & Engn, State Key Lab Crop Biol, Tai An 271018, Peoples R China
2.Shanghai Acad Agr Sci, Shanghai Key Lab Protected Hort Technol, Hort Res Inst, Shanghai 201403, Peoples R China
3.Nanjing Agr Univ, Coll Hort, Nanjing 210095, Peoples R China
4.North China Univ Sci & Technol, Coll Life Sci, Tangshan 063210, Peoples R China
关键词： hypocotyl; transcriptome; proteome; hormone; photosynthesis; pakchoi
期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.6； 五年影响因子：6.2 ）
ISSN： 1661-6596
年卷期： 2023 年 24 卷 18 期
页码：
收录情况： SCI
摘要： Hypocotyl length is a critical determinant for the efficiency of mechanical harvesting in pakchoi production, but the knowledge on the molecular regulation of hypocotyl growth is very limited. Here, we report a spontaneous mutant of pakchoi, lhy7.1, and identified its characteristics. We found that it has an elongated hypocotyl phenotype compared to the wild type caused by the longitudinal growth of hypocotyl cells. Different light quality treatments, transcriptome, and proteomic analyses were performed to reveal the molecular mechanisms of hypocotyl elongation. The data showed that the hypocotyl length of lhy7.1 was significantly longer than that of WT under red, blue, and white lights but there was no significant difference under dark conditions. Furthermore, we used transcriptome and label-free proteome analyses to investigate differences in gene and protein expression levels between lhy7.1 and WT. At the transcript level, 4568 differentially expressed genes (DEGs) were identified, which were mainly enriched in "plant hormone signal transduction", "photosynthesis", "photosynthesis-antenna proteins", and "carbon fixation in photosynthetic organisms" pathways. At the protein level, 1007 differentially expressed proteins (DEPs) were identified and were mainly enriched in photosynthesis-related pathways. The comprehensive transcriptome and proteome analyses revealed a regulatory network of hypocotyl elongation involving plant hormone signal transduction and photosynthesis-related pathways. The findings of this study help elucidate the regulatory mechanisms of hypocotyl elongation in lhy7.1.
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