Time-course transcriptome analysis of the two types of seeds provides insights into seed shape differentiation in wax gourd
文献类型： 外文期刊
作者： Luo, Chen 1 ; Yan, Jinqiang 1 ; Li, Zheng 2 ; Wang, Min 1 ; Liu, Wenrui 1 ; Xie, Dasen 1 ; Jiang, Biao 1 ;
作者机构： 1.Guangdong Acad Agr Sci, Vegetable Res Inst, Guangdong Key Lab New Technol Res Vegetables, Guangzhou 510640, Peoples R China
2.Northwest A&F Univ, Coll Hort, Yangling 712100, Shaanxi, Peoples R China
关键词： Wax gourd; Seed shape; Transcriptome; Differentially expressed genes
期刊名称：SCIENTIA HORTICULTURAE （ 影响因子：4.3； 五年影响因子：4.5 ）
ISSN： 0304-4238
年卷期： 2024 年 329 卷
页码：
收录情况： SCI
摘要： Wax gourd is an important vegetable crop in Cucurbitaceae. There are two shapes of wax gourd seeds, bilateral and unilateral. Bilateral seeds are more popular than unilateral seeds because they germinate faster along with a higher germination rate. Previously, we identified the seed shape determination gene YABBY4 through genetic mapping and genome-wide association study. However, the molecular mechanisms underlying seed shape differentiation remain elusive. In this study, the B214 variety containing bilateral seeds and the B227 variety containing unilateral seeds were subjected to time-course transcriptome analysis. Our results showed that genes related to secondary metabolite biosynthesis were differentially expressed between B214 and B227 seeds at all stages, and some lignin biosynthesis-related genes were highly expressed in B214 seeds at the later stages. At the early stages, genes associated with cell periphery, plasma membrane, plant hormone signal transduction, and MAPK signaling pathway were more active. Catalytic activity, biosynthetic, and metabolic process-related genes were differentially expressed at the later stages. Together, our findings dissect the transcriptomic differences between the two types of seeds and gain insights into the regulatory networks of seed shape differentiation in wax gourd.
- 相关文献
作者其他论文 更多>>
-
A nonsynonymous mutation in BhLS, encoding an acyl-CoA N-acyltransferase leads to fruit and seed size variation in wax gourd (Benincasa hispida)
作者：Yan, Jinqiang;Xie, Dasen;Wang, Yi;Wang, Min;Yang, Songguang;Jiang, Biao;Chen, Lin;Cai, Jinsen;Liu, Wenrui;Cheng, Jiaowen
关键词：
-
Excavation of Genes Response to Heat Resistance by Transcriptome Analysis in Bottle Gourd (Lagenaria siceraria (Mol.) Standl.)
作者：Wang, Min;Liu, Wenrui;Peng, Qingwu;Shi, Shaoqi;Jiang, Biao;Lin, Yu'e;Yang, Songguang;Wang, Min;Liu, Wenrui;Shi, Shaoqi;Cao, Liqin;Jiang, Biao;Zhao, Tianyue;Cui, Xiaojuan;Yang, Songguang;Wang, Ying
关键词：bottle gourd; RNA-Seq; DEGs; MAPK; bHLH; heat stress
-
Linkage and association mapping in multi-parental populations reveal the genetic basis of carotenoid variation in maize kernels
作者：Yin, Pengfei;Fu, Xiuyi;Feng, Haiying;Yang, Yanyan;Xu, Jing;Zhang, Xuan;Wang, Min;Ji, Shenghui;Zhao, Binghao;Fang, Hui;Du, Xiaoxia;Li, Yaru;Hu, Shuting;Li, Kun;Xu, Shutu;Li, Zhigang;Li, Jiansheng;Yang, Xiaohong;Yin, Pengfei;Fu, Xiuyi;Feng, Haiying;Yang, Yanyan;Xu, Jing;Zhang, Xuan;Wang, Min;Ji, Shenghui;Zhao, Binghao;Fang, Hui;Du, Xiaoxia;Li, Yaru;Hu, Shuting;Li, Kun;Xu, Shutu;Li, Zhigang;Li, Jiansheng;Yang, Xiaohong;Fu, Xiuyi;Wang, Yuandong;Liu, Fang;Li, Jiansheng;Yang, Xiaohong;Xiao, Yingni;Yang, Xiaohong
关键词：Carotenoids; Linkage analysis; Association mapping; Plastid terminal oxidase
-
Chromosome-level genome assembly and population genomics reveals crucial selection for subgynoecy development in chieh-qua
作者：Wang, Min;Cao, Zhenqiang;Jiang, Biao;Xie, Dasen;Chen, Lin;Shi, Shaoqi;Yang, Songguang;Peng, Qingwu;Wang, Kejian;Lu, Hongwei
关键词：
-
Identification of candidate genes controlling cucumber hypocotyl elongation under low light stress based on BSA-seq and RNA-seq
作者：Chen, Lin;Meng, Haoyuan;Chen, Baoying;Xie, Shuyan;Liu, Wenrui;Wang, Min;Yan, Jinqiang;Cai, Jinsen;Yang, Songguang;Jiang, Biao;Peng, Qingwu;Lin, Yu'e
关键词：Cucumber; Hypocotyl; Low light stress; BSA-seq; RNA-seq
-
Chemical compositions and cryo-adhesive probing of the epicuticular wax crystals on fruit surface of wax gourd (Benincasa hispida)
作者：Huang, Hua;Yan, Huaxue;Yan, Jinqiang;Jiang, Biao
关键词：Wax gourd; Epicuticular wax crystals; Cryo-adhesive; Scanning electronic microscope; Gas chromatography -mass spectrometry
-
Fine mapping and candidate gene analysis of gynoecy trait in chieh-qua (Benincasa hispida Cogn. var. chieh-qua How)
作者：Wang, Min;Yang, Songguang;Liu, Wei;Cao, Zhenqiang;Chen, Lin;Liu, Wenrui;Xie, Dasen;Yan, Jinqiang;Jiang, Biao;Peng, Qingwu;Wang, Min;Yang, Songguang;Liu, Wei;Cao, Zhenqiang;Chen, Lin;Liu, Wenrui;Xie, Dasen;Yan, Jinqiang;Jiang, Biao
关键词：chieh-qua; gynoecy; gene mapping; CqNET4; ethylene synthesis related genes
