Fine Mapping and Functional Analysis of Major QTL, CRq for Clubroot Resistance in Chinese Cabbage (Brassica rapa ssp. pekinensis)
文献类型： 外文期刊
作者： Wei, Xiaochun 1 ; Li, Jundang 1 ; Zhang, Xiaowei 1 ; Zhao, Yanyan 1 ; Nath, Ujjal Kumar 3 ; Mao, Lixia 1 ; Xie, Zhengqing 2 ; Yang, Shuangjuan 1 ; Shi, Gongyao 2 ; Wang, Zhiyong 1 ; Tian, Baoming 2 ; Su, Henan 1 ; Yang, Zhiyuan 4 ; Wei, Fang 1 ; Yuan, Yuxiang 1 ;
作者机构： 1.Grad T&R Base Zhengzhou Univ, Henan Acad Agr Sci, Inst Hort, Zhengzhou 450002, Peoples R China
2.Zhengzhou Univ, Sch Agr Sci, Henan Int Joint Lab Crop Gene Resources & Improve, Zhengzhou 450001, Peoples R China
3.Bangladesh Agr Univ, Dept Genet & Plant Breeding, Mymensingh 2202, Bangladesh
4.Cent South Univ, Sch Mat Sci & Engn, Changsha 410083, Peoples R China
关键词： Brassica rapa; clubroot resistance; BSA-Seq; RNA-Seq; fine-mapping; RACE; gateway; Arabidopsis thaliana transformation
期刊名称：AGRONOMY-BASEL （ 影响因子：3.949； 五年影响因子：4.117 ）
ISSN：
年卷期： 2022 年 12 卷 5 期
页码：
收录情况： SCI
摘要： Clubroot disease caused by Plasmodiophora brassicae is one of the major threats to Brassica crops. New clubroot resistant varieties of Chinese cabbage (B. rapa ssp. pekinensis) have been developed through breeding, but the underlying genetic mechanism of clubroot resistance is still unclear. In this study, two Chinese cabbage DH lines, clubroot-resistant Y635-10 and susceptible Y177-47 were crossed to develop F-2 population for fine mapping and cloning resistance gene CRq. After sequence analysis, the expression vector was constructed by gateway technology and transferred into Arabidopsis thaliana for functional characterization. Bulked segregant analysis sequencing (BSA-seq) confirmed that CRq is located in the 80 kb genomic region on chromosome A03 between markers GC30-FW/RV and BGA. In silico tools confirmed that the gene length was 3959 bp with 3675 bp coding sequences (CDs), and it has three exons and two introns. In addition, we found 72bp insertion in the third exon of CRq in the susceptible line. We developed and verified functional marker Br-insert1, by which genotyping results showed that 72bp insertion might lead to the destruction of the LRR region of Y177-47, resulting in a loss of resistance relative to clubroot. The results of genetic transformation showed that the roots for wild-type Arabidopsis thaliana were significantly enlarged compared with T-2 generation transgenic Arabidopsis after treatment by P. brassicae spores, and transgenic Arabidopsis had certain resistance. Therefore, CRq is a candidate gene of clubroot disease resistance in Chinese cabbage, which could be used as a reference for elucidating disease resistance mechanisms and the marker-assisted breeding of clubroot resistant varieties.
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