Genomic analysis of GBS data reveals genes associated with facial pigmentation in Xinyang blue-shelled layers
文献类型： 外文期刊
作者： Hou, Haobin 1 ; Wang, Xiaoliang 1 ; Zhang, Caiyun 2 ; Tu, Yingying 2 ; Lv, Wenwei 2 ; Cai, Xia 1 ; Xu, Zhigang 3 ; Yao, J 1 ;
作者机构： 1.Shanghai Acad Agr Sci, Shanghai 201106, Peoples R China
2.Natl Poultry Engineer Res Ctr, Shanghai 201106, Peoples R China
3.Shanghai Poultry Breeding Co Ltd, Shanghai 201100, Peoples R China
期刊名称：ARCHIVES ANIMAL BREEDING （ 影响因子：1.528； 五年影响因子：1.723 ）
ISSN： 0003-9438
年卷期： 2020 年 63 卷 2 期
页码：
收录情况： SCI
摘要： Facial pigmentation is an important economic trait of chickens, especially for laying hens, which will affect the carcass appearance of eliminated layers. Therefore, identifying the genomic regions and exploring the function of this region that contributes to understanding the variation of skin color traits is significant for breeding. In the study, 291 pure-line Xinyang blue-shelled laying hens were selected, of which 75 were dark-faced chickens and 216 were white-faced chickens. The population was sequenced and typed by GBS genotyping technology. The obtained high-quality SNPs and pigmentation phenotypes were analyzed by a genome-wide association study (GWAS) and a FST scan. Based on the two analytical methods, we identified a same genomic region (10.70-11.60 Mb) on chromosome 20 with 68 significant SNPs (- log 10(P)>6), mapped to 10 known genes, including NPEPL1, EDN3, GNAS, C20orf85, VAPB, BMP7, TUBB1, ELMO2, DDX27, and NCOA5, which are associated with dermal hyperpigmentation.
- 相关文献
作者其他论文 更多>>
-
Treatment and prevention of pigeon diarrhea through the application of Lactobacillus SNK-6
作者：Fan, Wu;Zhu, Yonghao;Hou, Haobin;Yao, Junfeng;Zhu, Lihui;Liu, Huili;Yan, Huaxiang;Fan, Wu;Zhu, Yonghao;Yan, Huaxiang
关键词：Lactobacillus salivarius; pigeon; diarrhea; Escherichia coli; fecal microbiota
-
Research Note: Study on the in-situ preservation of pigeons based on the level of endangerment of genetic resources
作者：Li, Xin;Hou, Haobin;Shen, Xiaohui;Yao, Junfeng;Yang, Changsuo;Li, Xin;Hou, Haobin;Yao, Junfeng;Yang, Changsuo;Zhao, Weimin;Chen, Yansen
关键词：pigeon; living species preservation; effective population content; endangered rating
-
Enhancing Growth and Gut Health in Squabs: The Impact of Fermented Mixed Feed
作者：Xiao, Changfeng;Li, Xin;Ding, Zhizhao;Lv, Wenwei;Yang, Changsuo;He, Daqian;Zhu, Lihui;Zhang, Hongcai
关键词：fermented feed; microbiome; metabolome; squabs; gut
-
Effects of dietary supplementation with rhamnolipids on the growth performance, nutrient digestibility, slaughter yield, and lipid metabolism of broiler chickens
作者：Cai, Xuan;Xue, Huiqin;Hang, Yiqiong;Lu, Yonghong;Yao, Junfeng;Lu, Yang;Yao, Junfeng
关键词：Rhamnolipids; broiler chickens; lipid metabolism; emulsification
-
Genome-wide association study of growth traits and validation of key mutations (MSTN c.C861T) associated with the muscle mass of meat pigeons
作者：Hou, Haobin;Wang, Xiaoliang;Li, Xin;Cai, Xia;Yang, Changsuo;Yao, Junfeng;Hou, Haobin;Wang, Xiaoliang;Li, Xin;Cai, Xia;Tu, Yingying;Yang, Changsuo;Yao, Junfeng
关键词：genome-wide association study; growth traits; MSTN; muscle mass; pigeons
-
The miR-216/miR-217 Cluster Regulates Lipid Metabolism in Laying Hens With Fatty Liver Syndrome via PPAR/SREBP Signaling Pathway
作者：Zhu, Lihui;Liao, Rongrong;Yan, Huaxiang;Xiao, Changfeng;Yang, Yunzhou;Wang, Huiying;Yang, Changsuo;Zhu, Lihui;Yan, Huaxiang;Xiao, Changfeng;Yang, Changsuo;Huang, Jiwen
关键词：laying hens; fatty liver; miR-216; miR-217 cluster; lipid metabolism; fat deposition; interventional strategy
-
Using comparative genomics to detect mutations regulating plumage variations in graylag (A. anser) and swan geese (A. cygnoides)
作者：Yang, Yunzhou;Wang, Huiying;Li, Guangquan;Liu, Yi;Wang, Cui;Wang, Xianze;Yao, Junfeng;Zhu, Lihui;He, Daqian;Qiu, Songyin
关键词：Swan goose; Graylag goose; Plumage variations; Selection; EDNRB2; MLANA
