An evolutionary population structure model reveals pleiotropic effects of GmPDAT for traits related to seed size and oil content in soybean
文献类型： 外文期刊
作者： Liu, Jin-Yang 1 ; Zhang, Ya-Wen 1 ; Han, Xu 1 ; Zuo, Jian-Fang 1 ; Zhang, Zhibin 2 ; Shang, Haihong 2 ; Song, Qijian 3 ; Zhang, Yuan-Ming 1 ;
作者机构： 1.Huazhong Agr Univ, Coll Plant Sci & Technol, Crop Informat Ctr, Wuhan 430070, Peoples R China
2.Zhengzhou Univ, State Key Lab Cotton Biol, Zhengzhou Res Base, Zhengzhou 450000, Peoples R China
3.ARS, Soybean Genom & Improvement Lab, USDA, Beltsville, MD 20705 USA
关键词： Evolutionary population structure; genome-wide association studies; Glycine max; GmPDAT; GmDGAT1; pleiotropism
期刊名称：JOURNAL OF EXPERIMENTAL BOTANY （ 影响因子：6.992； 五年影响因子：7.86 ）
ISSN： 0022-0957
年卷期： 2020 年 71 卷 22 期
页码：
收录情况： SCI
摘要： Seed oil traits in soybean that are of benefit to human nutrition and health have been selected for during crop domestication. However, these domesticated traits have significant differences across various evolutionary types. In this study, we found that the integration of evolutionary population structure (evolutionary types) with genome-wide association studies increased the power of gene detection, and it identified one locus for traits related to seed size and oil content on chromosome 13. This domestication locus, together with another one in a 200-kb region, was confirmed by the GEMMA and EMMAX software. The candidate gene, GmPDAT, had higher expressional levels in high-oil and large-seed accessions than in low-oil and small-seed accessions. Overexpression lines had increased seed size and oil content, whereas RNAi lines had decreased seed size and oil content. The molecular mechanism of GmPDAT was deduced based on results from linkage analysis for triacylglycerols and on histocytological comparisons of transgenic soybean seeds. Our results illustrate a new approach for identifying domestication genes with pleiotropic effects.
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