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Genome-wide association studies and transcriptome sequencing analysis reveal novel genes associated with Al tolerance in wheat

文献类型： 外文期刊

作者： Zeng, Meng 1 ; Fan, Xiangyun 3 ; Zhang, Xueqing 1 ; Teng, Lidong 1 ; Pang, Jiayin 4 ; Zhou, Meixue 2 ; Cao, Fangbin 1 ;

作者机构： 1.Zhejiang Univ, Coll Agr & Biotechnol, Dept Agron, Zijingang Campus, Hangzhou 310058, Peoples R China

2.Univ Tasmania, Tasmanian Inst Agr, Hobart, Australia

3.Jiangsu Acad Agr Sci, Prov Key Lab Agrobiol, 50 Zhongling St, Nanjing 210014, Jiangsu, Peoples R China

4.Univ Western Australia, UWA Inst Agr, Sch Agr & Environm, Perth, WA 6001, Australia

关键词： Al tolerance; Association mapping; TaALMT1; Novel QTL; Wheat

期刊名称：CHEMOSPHERE （ 影响因子：8.8； 五年影响因子：8.3 ）

ISSN： 0045-6535

年卷期： 2023 年 317 卷

页码：

收录情况： SCI

摘要： Aluminum (Al) toxicity is a major threat to the productivity and quality of wheat on acid soil. Identifying novel Al tolerance genes is crucial for breeders to pyramid different tolerance mechanisms thus leading to greater Al tolerance. We aim to identify novel quantitative trait loci (QTL) and key candidate genes associated with Al tolerance in wheat. Herein, we investigated the genotypic variation in Al tolerance among 334 wheat varieties using an acid soil assay. Genome-wide association study (GWAS) and transcriptome were carried out to identify key genes for Al tolerance. GWAS identified several QTL associated with acid soil tolerance including one major QTL on chromosome 1A, in addition to the QTL on 4D where TaALMT1 is located. The four significant markers around the newly identified QTL explained 27.2% of the phenotypic variation. With the existence of reported markers for TaALMT1, more than 97% of the genotypes showed tolerance to Al. For those genotypes with the existence of the novel QTL on 1A but without TaALMT1, more than 90% of genotypes showed medium or high tolerance to Al, confirming the existence of the Al tolerance gene(s) on chromosome 1A. By combining GWAS and RNA-seq analysis, we identified 11 candidate genes associated with Al tolerance. The results provide new insights into the genetic basis of Al tolerance in wheat. The identified genes can be used for the breeding of Al tolerant accessions.

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