Comparative transcriptome analysis in Chinese cabbage (Brassica rapa ssp. pekinesis) for DEGs of Ogura-, Polima-CMS and their shared maintainer
文献类型： 外文期刊
作者： Wei, Xiaochun 1 ; Lv, Yanyan 1 ; Zhao, Yanyan 2 ; Nath, Ujjal Kumar 3 ; Yuan, Yuxiang 2 ; Wang, Zhiyong 2 ; Yang, Shua 1 ;
作者机构： 1.Zhengzhou Univ, Sch Agr Sci, Coll Life Sci, Zhengzhou 450001, Henan, Peoples R China
2.Henan Acad Agr Sci, Inst Hort, Zhengzhou 450002, Henan, Peoples R China
3.Bangladesh Agr Univ, Dept Genet & Plant Breeding, Mymensingh 2202, Bangladesh
关键词： Transcriptome; Ogura CMS; Polima CMS; Maintainer line
期刊名称：PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS （ 影响因子：2.391； 五年影响因子：2.836 ）
ISSN： 0971-5894
年卷期： 2020 年 26 卷 4 期
页码：
收录情况： SCI
摘要： Cytoplasmic male sterility (CMS) is maternally inherited trait, which hinders the ability to produce viable pollen in plants. It serves as a useful tool for hybrid seed production via exploiting heterosis in crops. The molecular mechanism of CMS and fertility restoration has been investigated in different crops. However, limited number of reports is available on comparison of Ogura- and Polima-CMS with their shared maintainer in Chinese cabbage. We performed transcript profiling of sterile Ogura CMS (Tyms), Polima CMS (22m2) and their shared maintainer line (231-330) with an aim to identify genes associated with male sterility. In this work, we identified 912, 7199 and 6381 DEGs (Differentially Expressed Genes) in 22m2 Vs Tyms, 231-330 VS 22m2 and 231-330 Vs Tyms, respectively. The GO (Gene Ontology) annotation and KEGG pathway analysis suggested that most of the DEGs were involved in pollen development, carbon metabolism, lipase activity, lipid binding, penta-tricopeptide repeat (PPR), citrate cycle and oxidative phosphorylation, which were down-regulated in both CMS lines. This result will provide an important resource for further understanding of functional pollen development, the CMS mechanism and to improve molecular breeding in Chinese cabbage.
- 相关文献
作者其他论文 更多>>
-
A chromosome-level reference genome facilitates the discovery of clubroot-resistant gene Crr5 in Chinese cabbage
作者：Yang, Shuangjuan;Zhang, Wenjing;Su, Henan;Wei, Xiaochun;Zhao, Yanyan;Wang, Zhiyong;Zhang, Xiaowei;Yuan, Yuxiang;Wang, Xiangfeng;Guo, Li;Wang, Zhaojun
关键词：
-
Transcriptome Analysis Revealed Hub Genes Related to Tipburn Resistance in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)
作者：Bi, Yaning;Zhang, Wenjing;Yuan, Yuxiang;Zhao, Yanyan;Li, Lin;Su, Henan;Tian, Baoming;Wei, Fang;Wei, Xiaochun;Zhang, Xiaowei;Bi, Yaning;Tian, Baoming;Wei, Fang;Wei, Xiaochun;Feng, Jianqi;Wang, Peiyun;Ding, Cong
关键词：tipburn; Chinese cabbage; calcium deficiency; RNA-seq
-
Differential Sensitivity of Photosynthetic Electron Transport to Dark-Induced Senescence in Wheat Flag Leaves
作者：Yang, Cheng;Du, Simeng;Shi, Yanhua;Zhang, Deqi;Yue, Junqin;Li, Xiangdong;Jin, Haiyang;Fang, Baoting;Yan, Ge;Wei, Fang;Yan, Ge;Zhang, Zishan
关键词：Wheat; Senescence; Prompt fluorescence; Modulated 820-nm reflection; Delayed fluorescence
-
Chromosome pairing during meiosis in Brassica hybrid allodiploids with evolutionarily related genomes
作者：Li, Xiaoying;Liu, Yue;Xie, Zhengqing;Tian, Baoming;Datta, Tanusree;Wei, Fang;Shi, Gongyao;Yuan, Yuxiang;Wei, Xiaochun
关键词：
Brassica allodiploid; Meiosis; Chromosome pairing; Synapsis; Transcriptome; Homologous recombination -
Mitotic pollen abnormalities are linked to Ogura cytoplasmic male sterility in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
作者：Wei, Xiaochun;Zhang, Yuanlin;Zhao, Yanyan;Yang, Shuangjuan;Su, Henan;Wang, Zhiyong;Zhang, Wenjing;Wei, Fang;Yuan, Yuxiang;Zhang, Xiaowei;Wei, Xiaochun;Zhang, Yuanlin;Chen, Weiwei;Tian, Baoming;Wei, Fang;Zhang, Xiaowei;Nath, Ujjal Kumar
关键词：Ogura CMS; Chinese cabbage; cytology; transcriptome; PCD; pollen abortion
-
Genetic Analysis and Fine Mapping of Spontaneously Mutated Male Sterility Gene in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)
作者：Xu, Qian;Wei, Xiaochun;Zhao, Yanyan;Zhang, Wenjing;Su, Henan;Chen, Weiwei;Wei, Fang;Yuan, Yuxiang;Zhang, Xiaowei;Xu, Qian;Wei, Xiaochun;Chen, Weiwei;Wei, Fang;Feng, Jianqi;Wang, Peiyun;Ding, Cong
关键词：Chinese cabbage; genic male sterility; map-based cloning; acyl-CoA synthetase 5; phenylpropanoid biosynthesis
-
The Adaptability of Different Wheat Varieties to Deep Sowing in Henan Province of China
作者：Yang, Cheng;Wang, Rongkun;Tian, Cheng;Zhang, Deqi;Cheng, Hongjian;Li, Xiangdong;Fang, Baoting;Jin, Haiyang;Song, Hang;Yan, Ge;Wang, Rongkun;Tian, Cheng;Tian, Baoming;Wei, Fang;Yan, Ge
关键词：cluster analysis; deep sowing; principal component analysis; seed germination; wheat; variety
