Transcriptome and metabolome analyses of Shatian pomelo (Citrus grandis var. Shatinyu Hort) leaves provide insights into the overexpression of the gibberellin-induced gene CcGASA4
文献类型: 外文期刊
作者: Wu, Tianli 1 ; Liu, Kaidong 1 ; Chen, Min 2 ; Jiang, Bo 2 ; Gong, Qijing 1 ; Zhong, Yun 2 ;
作者机构: 1.Lingnan Normal Univ, Life Sci & Technol Sch, Zhanjiang, Peoples R China
2.Guangdong Acad Agr Sci, Inst Fruit Tree Res, Guangzhou, Peoples R China
3.Key Lab South Subtrop Fruit Biol & Genet Resource, Guangzhou, Peoples R China
4.Sci & Technol Dept Guangdong Prov, Key Lab Trop & Subtrop Fruit Tree Res, Guangzhou, Peoples R China
关键词: Citrus; gibberellin; CcGASA4; transcriptome; metabolome; hormone; plant-pathogen interaction
期刊名称:FRONTIERS IN PLANT SCIENCE ( 影响因子:6.627; 五年影响因子:7.255 )
ISSN: 1664-462X
年卷期: 2022 年 13 卷
页码:
收录情况: SCI
摘要: The gibberellic acid (GA)-stimulated Arabidopsis (GASA) gene family is highly specific to plants and plays crucial roles in plant growth and development. CcGASA4 is a member of the GASA gene family in citrus plants; however, the current understanding of its function in citrus is limited. We used CcGASA4-overexpression transgenic citrus (OEGA) and control (CON) plants to study the role of CcGASA4 in Shatian pomelo. The RNA sequencing (RNA-seq) analysis showed that 3,522 genes, including 1,578 upregulated and 1,944 downregulated genes, were significantly differentially expressed in the CON versus OEGA groups. The Gene Ontology enrichment analysis showed that 178 of the differentially-expressed genes (DEGs) were associated with flowers. A Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that the DEGs were enriched in 134 pathways, including "plant-pathogen interaction", "MAPK signaling pathway-plant", "phenylpropane biosynthesis", "plant hormone signal transduction", "phenylalanine, tyrosine and tryptophan biosynthesis", and "flavonoid and flavonol biosynthesis". The most significantly-enriched pathway was "plant-pathogen interaction", in which 203 DEGs were enriched (126 DEGs were upregulated and 78 were downregulated). The metabolome analysis showed that 644 metabolites were detected in the OEGA and CON samples, including 294 differentially-accumulated metabolites (DAMs; 83 upregulated versus 211 downregulated in OEGA compared to CON). The metabolic pathway analysis showed that these DAMs were mainly involved in the metabolic pathways of secondary metabolites, such as phenylpropanoids, phenylalanine, flavone, and flavonol biosynthesis. Thirteen flavonoids and isoflavones were identified as DAMs in OEGA and CON. We also discovered 25 OEGA-specific accumulated metabolites and found 10 that were associated with disease resistance. CcGASA4 may therefore play a functional role in activating the expression of MAPK signaling transduction pathway and disease resistance genes, inhibiting the expression of auxin- and ethylene-related genes, and activating or inhibiting the expression of brassinosteroid biosynthesis- and abscisic acid-related genes. CcGASA4 may also play a role in regulating the composition and abundance of flavonoids, isoflavones, amino acids, purines, and phenolic compounds. This study provides new insights into the molecular mechanisms of action of CcGASA4 in citrus plants.
- 相关文献
作者其他论文 更多>>
-
Effect of tree height and spraying methods on Diaphorina citri kuwayama endosymbionts in the context of Huanglongbing disease management in citrus orchards
作者:Hussain, Mubasher;Tao, Tonglai;Xiu, Baolin;Ye, Fengxian;Gao, Jing;Mao, Runqian;Zhong, Yun
关键词:Candidatus Carsonella ruddii; citrus tree; host-symbiont interactions; pest and disease management; spraying techniques; Wolbachia
-
Transcriptomic and physiological comparison of Shatangju (Citrus reticulata) and its late-maturing mutant provides insights into auxin regulation of citrus fruit maturation
作者:Lv, Yuanda;Ren, Shuang;Wu, Bo;Jiang, Bo;Zhou, Birong;Zhong, Guangyan;Zhong, Yun;Yan, Huaxue;Jiang, Caizhong
关键词:Citrus fruit; auxin; carotenoid; maturation; transcriptome
-
MicroRNA miR171b Positively Regulates Resistance to Huanglongbing of Citrus
作者:Lv, Yuanda;Zhong, Yun;Jiang, Bo;Yan, Huaxue;Ren, Shuang;Cheng, Chunzhen;Lv, Yuanda;Zhong, Yun;Yan, Huaxue;Jiang, Bo;Cheng, Chunzhen
关键词:miR171b; Huanglongbing; overexpression; genetic transformation
-
Having a Same Type IIS Enzyme's Restriction Site on Guide RNA Sequence Does Not Affect Golden Gate (GG) Cloning and Subsequent CRISPR/Cas Mutagenesis
作者:Moniruzzaman, M.;Zhong, Yun;Huang, Zhifeng;Zhong, Guangyan;Moniruzzaman, M.;Zhong, Yun
关键词:gRNA designing; modular cloning; restriction digestion; genome editing; base editing; plant transformation
-
The Upregulated Expression of the Citrus RIN4 Gene in HLB Diseased Citrus Aids Candidatus Liberibacter Asiaticus Infection
作者:Cheng, Chunzhen;Wang, Bin;Zhang, Yongyan;Wu, Huan;Cheng, Chunzhen;Zhong, Yun;Zhang, Yongyan;Jiang, Nonghui;Wu, Bo;Jiang, Bo;Cheng, Chunzhen;Zhong, Yun;Lv, Yuanda;Lv, Yuanda
关键词:citrus; RIN4; Huanglongbing; disease response; genetic transformation
-
Effective detection of early Citrus Huanglongbing by polyethyleneimine modified multi-walled carbon nanotubes gas sensor
作者:Weng, Jingfeng;Zhang, Junzhe;Zhang, Chunyu;Chen, Wenli;Lv, Jin;Liu, Jinhui;Zhou, Chengqian;Yuan, Jun;Wang, Min;Xu, Dongqing;Zhong, Yun
关键词:Citrus Huanglongbing; Volatile organic compounds; Carboxylic multi-walled carbon nanotubes; Gas sensors; Polyethyleneimine
-
Comparative transcriptomics and genomic analyses reveal differential gene expression related to Colletotrichum brevisporum resistance in papaya (Carica papaya L.)
作者:Yang, Min;Zhou, Chenping;Yang, Hu;Kuang, Ruibin;Huang, Bingxiong;Wei, Yuerong;Liu, Kaidong
关键词:papaya; anthracnose; Colletotrichum brevisporum; DEGs; candidate genes