The grapevine kinome: annotation, classification and expression patterns in developmental processes and stress responses
文献类型： 外文期刊
作者： Zhu, Kaikai 1 ; Wang, Xiaolong 1 ; Liu, Jinyi 1 ; Tang, Jun 3 ; Cheng, Qunkang 4 ; Chen, Jin-Gui 5 ; Cheng, Zong-Ming 1 ;
作者机构： 1.Nanjing Agr Univ, Coll Hort, Nanjing 210095, Jiangsu, Peoples R China
2.Univ Tennessee, Dept Plant Sci, Knoxville, TN 37996 USA
3.Jiangsu Acad Agr Sci, Inst Hort, Jiangsu Key Lab Hort Crop Genet Improvement, Nanjing 210014, Jiangsu, Peoples R China
4.Univ Tennessee, Dept Entomol & Plant Pathol, Knoxville, TN 37996 USA
5.Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37831 USA
期刊名称：HORTICULTURE RESEARCH （ 影响因子：6.793； 五年影响因子：6.589 ）
ISSN： 2052-7276
年卷期： 2018 年 5 卷
页码：
收录情况： SCI
摘要： Protein kinases (PKs) have evolved as the largest family of molecular switches that regulate protein activities associated with almost all essential cellular functions. Only a fraction of plant PKs, however, have been functionally characterized even in model plant species. In the present study, the entire grapevine kinome was identified and annotated using the most recent version of the grapevine genome. A total of 1168 PK-encoding genes were identified and classified into 20 groups and 121 families, with the RLK-Pelle group being the largest, with 872 members. The 1168 kinase genes were unevenly distributed over all 19 chromosomes, and both tandem and segmental duplications contributed to the expansion of the grapevine kinome, especially of the RLK-Pelle group. Ka/Ks values indicated that most of the tandem and segmental duplication events were under purifying selection. The grapevine kinome families exhibited different expression patterns during plant development and in response to various stress treatments, with many being coexpressed. The comprehensive annotation of grapevine kinase genes, their patterns of expression and coexpression, and the related information facilitate a more complete understanding of the roles of various grapevine kinases in growth and development, responses to abiotic stress, and evolutionary history.
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