Potential relations between post-spliced introns and mature mRNAs in the Caenorhabditis elegans genome
文献类型： 外文期刊
作者： Bo, Suling 1 ; Li, Hong 1 ; Zhang, Qiang 2 ; Lu, Zhanyuan 3 ; Bao, Tonglaga 1 ; Zhao, Xiaoqing 3 ;
作者机构： 1.Inner Mongolia Univ, Sch Phys Sci & Technol, Lab Theoret Biophys, Hohhot 010021, Peoples R China
2.Inner Mongolia Agr Univ, Coll Sci, Hohhot 010018, Peoples R China
3.Inner Mongolia Univ, Sch Life Sci, Hohhot 010021, Peoples R China
4.Inner Mongolia Acad Agr & Anim Husb Sci, Hohhot 010031, Peoples R China
关键词： Potential interaction; Optimal matched segment; Introns; Mature mRNA; Intron function
期刊名称：JOURNAL OF THEORETICAL BIOLOGY （ 2020影响因子：2.691； 五年影响因子：2.374 ）
ISSN： 0022-5193
年卷期： 2019 年 467 卷
收录情况： SCI
摘要： There are potential interactions between introns and their corresponding coding sequences (CDSs) in ribosomal protein genes that have been proposed by our group and the interactions are achieved by sequence matches between the two kinds of sequences. Here, the optimal matching relations between mature mRNAs and their corresponding introns in Caenorhabditis elegans (C.elegans) were investigated by improved Smith-Waterman local alignment software. Our results showed that the remarkably matched regions appear in the untranslated regions (UTRs) of mRNAs, especially in the 3' UTR. The optimal matched segments (OMSs) are highly organized segments. In addition, the optimal matching relations were analysed between mature mRNAs and other introns. The matching strengths in the UTRs are clearly lower than those in their corresponding introns. Our studies indicate that there are potential interactions between mature mRNAs and their corresponding introns and the post-spliced introns should have other novel functions in the gene expression process. (C) 2019 Published by Elsevier Ltd.
- 相关文献
作者其他论文 更多>>
-
A Reasonable Rotation Fallow Mode Enhances the Complexity of the Soil Bacterial Network and Enriches Nitrogen-Cycling-Related Taxa
作者：Shi, Gongfu;Fang, Jing;Wei, Shuli;Zhang, Fan;Wu, Jianhui;Zhao, Lili;Zhao, Xiaoqing;Lu, Zhanyuan;Wei, Shuli;Cheng, Yuchen;Su, Shaofeng;Zhang, Xiangqian;Wang, Jianguo;Zhao, Xiaoqing;Lu, Zhanyuan
关键词：rotation fallow mode; soil characteristics; microbial communities; functional taxa
-
A Multi-Omics Analysis Revealed the Diversity of the MYB Transcription Factor Family's Evolution and Drought Resistance Pathways
作者：Zhang, Fan;Ma, Jie;Liu, Ying;Fang, Jing;Wei, Shuli;Xie, Rui;Han, Pingan;Zhao, Xiaoqing;Lu, Zhanyuan;Zhang, Fan;Ma, Jie;Liu, Ying;Fang, Jing;Wei, Shuli;Xie, Rui;Han, Pingan;Zhao, Xiaoqing;Lu, Zhanyuan;Zhang, Fan;Ma, Jie;Liu, Ying;Fang, Jing;Wei, Shuli;Xie, Rui;Han, Pingan;Zhao, Xiaoqing;Lu, Zhanyuan;Zhang, Fan;Ma, Jie;Liu, Ying;Fang, Jing;Wei, Shuli;Xie, Rui;Han, Pingan;Zhao, Xiaoqing;Lu, Zhanyuan;Ma, Jie;Liu, Ying;Fang, Jing;Wei, Shuli;Zhao, Xiaoqing;Lu, Zhanyuan;Ma, Jie;Liu, Ying;Fang, Jing;Wei, Shuli;Zhao, Xiaoqing;Lu, Zhanyuan;Bo, Suling
关键词：MYB transcription factor; drought; transcriptome; evolution; bioinformatics
-
Analyzing the Diversity of MYB Family Response Strategies to Drought Stress in Different Flax Varieties Based on Transcriptome Data
作者：Zhang, Fan;Liu, Ying;Ma, Jie;Zhao, Xiaoqing;Lu, Zhanyuan;Zhang, Fan;Liu, Ying;Ma, Jie;Su, Shaofeng;Chen, Liyu;Cheng, Yuchen;Buter, Siqin;Zhao, Xiaoqing;Yi, Liuxi;Lu, Zhanyuan;Zhang, Fan;Liu, Ying;Ma, Jie;Su, Shaofeng;Chen, Liyu;Cheng, Yuchen;Buter, Siqin;Zhao, Xiaoqing;Lu, Zhanyuan;Yi, Liuxi
关键词：expression profile; functional annotation; heat map; transcription factor; WGCNA
-
High-Quality Genome Assembly and Genome-Wide Association Study of Male Sterility Provide Resources for Flax Improvement
作者：Zhao, Xiaoqing;Gao, Fengyun;Cheng, Yuchen;Zhang, Hui;Zhou, Yu;Jia, Xiaoyun;Su, Shaofeng;Zhang, Xiangqian;Ren, Yongfeng;Mu, Yanxin;Jin, Xiaolei;Li, Qiang;Bateer, Siqin;Lu, Zhanyuan;Yi, Liuxi;Zuo, Yongchun;Cheng, Yuchen;Zhang, Dejian;Zhang, Xiangqian;Ren, Yongfeng;Mu, Yanxin;Bateer, Siqin;Lu, Zhanyuan;Zuo, Yongchun;Cheng, Yuchen;Zhang, Dejian;Zhang, Xiangqian;Ren, Yongfeng;Lu, Zhanyuan;Cheng, Yuchen;Zhang, Dejian;Zhang, Xiangqian;Ren, Yongfeng;Lu, Zhanyuan
关键词：flax; genome assembly; male sterility; GWAS
-
Dynamic changes of soil microorganisms in rotation farmland at the western foot of the Greater Khingan range
作者：Wei, Shuli;Fang, Jing;Zhang, Tianjiao;Ma, Jie;Ren, Yongfeng;Zhao, Xiaoqing;Zhang, Xiangqian;Lu, Zhanyuan;Wei, Shuli;Wang, Jianguo;Cheng, Yuchen;Xie, Rui;Liu, Zhixiong;Su, Erhu;Ren, Yongfeng;Zhao, Xiaoqing;Zhang, Xiangqian;Lu, Zhanyuan;Wei, Shuli;Fang, Jing;Zhang, Tianjiao;Wang, Jianguo;Cheng, Yuchen;Ma, Jie;Xie, Rui;Ren, Yongfeng;Zhao, Xiaoqing;Zhang, Xiangqian;Lu, Zhanyuan;Wei, Shuli;Fang, Jing;Zhang, Tianjiao;Wang, Jianguo;Cheng, Yuchen;Ma, Jie;Xie, Rui;Ren, Yongfeng;Zhao, Xiaoqing;Zhang, Xiangqian;Lu, Zhanyuan
关键词：rotation patterns; drought stress; bacteria; fungi; soil factors
-
Screening and genome-wide analysis of lignocellulose-degrading bacteria from humic soil
作者：Zhang, Tianjiao;Wei, Shuli;Liu, Yajie;Ma, Jie;Gao, Yanrong;Su, Shaofeng;Zhao, Xiaoqing;Lu, Zhanyuan;Zhang, Tianjiao;Wei, Shuli;Liu, Yajie;Ma, Jie;Yue, Linfang;Gao, Yanrong;Cheng, Yuchen;Ren, Yongfeng;Su, Shaofeng;Zhao, Xiaoqing;Lu, Zhanyuan;Zhang, Tianjiao;Wei, Shuli;Liu, Yajie;Ma, Jie;Gao, Yanrong;Cheng, Yuchen;Ren, Yongfeng;Su, Shaofeng;Zhao, Xiaoqing;Lu, Zhanyuan;Zhang, Tianjiao;Wei, Shuli;Liu, Yajie;Ma, Jie;Gao, Yanrong;Cheng, Yuchen;Ren, Yongfeng;Su, Shaofeng;Zhao, Xiaoqing;Lu, Zhanyuan;Cheng, Chao
关键词：cellulose-degrading bacteria; Bacillus velezensis; whole-genome sequencing; comparative genomic analysis; carbohydrate-active enzyme
-
A novel approach to analyze the association characteristics between post-spliced introns and their corresponding mRNA
作者：Bo, Suling;Ning, Pengfei;Yuan, Ningping;Weng, Yujie;Liang, Ying;Wang, Huitao;Li, Zhongxian;Sun, Qiuying;Sun, Qiuying;Lu, Zhanyuan;Zhao, Xiaoqing;Lu, Zhanyuan;Zhao, Xiaoqing;Lu, Zhanyuan;Zhao, Xiaoqing;Lu, Zhanyuan;Zhao, Xiaoqing
关键词：intron; alignment method; interaction; mRNA; evolutionary process
