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Pantoea endophytica sp. nov., novel endophytic bacteria isolated from maize planting in different geographic regions of northern China

文献类型： 外文期刊

作者： Gao, Jun-lian 1 ; Xue, Jing 1 ; Yan, Hui 3 ; Tong, Shuai 2 ; Khan, Mohammad Sayyar 4 ; Wang, Li-wei 1 ; Mao, Xiao-jie; 1 ;

作者机构： 1.Beijing Acad Agr & Forestry, Beijing Key Lab Agr Genet Resources & Biotechnol, Beijing Agro Biotechnol Res Ctr, Beijing 100097, Peoples R China

2.Chinese Acad Agr Sci, Inst Agr Resources & Reg Planning, Minist Agr & Rural Affairs, Key Lab Microbial Resources, Beijing 100081, Peoples R China

3.Hebei Agr Univ, Coll Anim Sci & Technol, Baoding 071001, Peoples R China

4.Univ Agr, Fac Crop Prod Sci, IBGE, Genom & Bioinformat Lab, Peshawar 25000, Pakistan

关键词： Pantoea endophytica; Zea mays L.; Phylogeny; Genome; Polyphasic approach

期刊名称：SYSTEMATIC AND APPLIED MICROBIOLOGY （ 影响因子：4.022； 五年影响因子：4.396 ）

ISSN： 0723-2020

年卷期： 2019 年 42 卷 4 期

页码：

收录情况： SCI

摘要： Four endophytic bacterial strains were isolated from root, stem and leaf of maize planted in different regions of northern China. The four strains possessed almost identical 16S rRNA gene sequences. However, REP-PCR fingerprint patterns discriminated that they were not from one clonal origin. Furthermore, the average nucleotide identity (ANI) values among them were higher than 95%, suggesting they all belong to one species. Based on 16S rRNA gene phylogeny, the four strains were clustered together with Pantoea rodasii LMG 26273(T) and Pantoea rwandensis LMG 26275(T), but on a separate branch. Multilocus sequence analysis (MLSA) indicated that the four strains form a novel Pantoea species. Authenticity of the novel species was confirmed by ANI comparisons between strain 596(T) and its closest relatives, since obtained values were considerably below the proposed thresholds for the species delineation. The genome size of 596(T) was 5.1Mbp, comprising 4896 predicted genes with DNA G + C content of 57.8 mol%. The respiratory quinone was ubiquinone-8 (Q-8) and the polar lipid profile consisted of phosphatidylethanolamin, diphosphatidylglycerol, phosphatidylglycerol, unidentified aminophospholipid and unidentified phospholipid. The major fatty acids of strain 596(T) were C-16:0, summed feature 2 (C-12:0 aldehyde), summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c) and summed feature 8 (C-18:1 omega 7c and/or C-18:1 omega 6c). Based on phylogenetic, genomic, phenotypic and chemotaxonomic data, the four isolates are considered to represent a novel species of the genus Pantoea, for which the name Pantoea endophytica sp. nov., is proposed, with 596(T) (= DSM 100,785(T) = CGMCC 1.15280(T)) as type strain. (C) 2019 Elsevier GmbH. All rights reserved.

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