Identification of Dwarfing Candidate Genes in Brassica napus L. LSW2018 through BSA-Seq and Genetic Mapping
文献类型： 外文期刊
作者： Huang, Sha 1 ; Wang, Fang 1 ; Li, Yang 1 ; Wang, Zhuanzhuan 1 ; Zhang, Ruimao 1 ; Li, Jijun 1 ; Li, Chao 1 ;
作者机构： 1.Guizhou Acad Agr Sci, Guizhou Oil Crops Res Inst, Guiyang 550006, Peoples R China
2.Minist Agr & Rural Affairs, Key Lab Crop Genet Resources & Germplasm Innovat K, Guiyang 550006, Peoples R China
3.Guizhou Univ, Key Lab Plant Resource Conservat & Germplasm Innov, Minist Educ, Guiyang 550025, Peoples R China
关键词： LSW2018; BSA-seq; dwarf; candidate gene
期刊名称：PLANTS-BASEL （ 影响因子：4.1； 五年影响因子：4.5 ）
ISSN： 2223-7747
年卷期： 2024 年 13 卷 16 期
页码：
收录情况： SCI
摘要： Plant height, as a crucial component of plant architecture, exerts a significant influence on rapeseed (Brassica napus L.) lodging resistance, photosynthetic efficiency, yield, and mechanized harvest level. A previous study identified dwarf rapeseed LSW2018. In this study, LSW2018 (dwarf parent (PD)) was crossed with 389 (high parent (PH)) to establish the F-2 population, and 30 extremely dwarf (bulk-D) and high (bulk-H) plants in the F-2 population were respectively selected to construct two bulked DNA pools. Whole-genome sequencing and variation analysis (BSA-seq) were performed on these four DNA pools (PD, PH, bulk-D, and bulk-H). The BSA-seq results revealed that the genomic region responsible for the dwarf trait spanned from 19.30 to 22.19 Mb on chromosome A03, with a length of 2.89 Mb. After fine mapping with simple sequence repeat (SSR) markers, the gene was narrowed to a 0.71 Mb interval. Within this region, a total of 113 genes were identified, 42 of which contained large-effect variants. According to reference genome annotation and qRT-PCR analysis, there are 17 differentially expressed genes in this region between high and dwarf individuals. This study preliminarily reveals the genetic basis of LSW2018 dwarfing and provides a theoretical foundation for the molecular marker-assisted breeding of dwarf rapeseed.
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