Development and characterization of 68 SNPs markers in the critically endangered species, Palea steindachneri
文献类型： 外文期刊
作者： Zhu, Junxian 1 ; Liu, Pan 1 ; Ji, Liqin 1 ; Hong, Xiaoyou 1 ; Liu, Xiaoli 1 ; Chen, Haigang 1 ; Wei, Chengqing 1 ; Zhu, Xinping 1 ; Chen, Chen 1 ; Li, Wei 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Pearl River Fisheries Res Inst, Key Lab Trop & Subtrop Fishery Resources Applicat, Minist Agr & Rural Affairs, Guangzhou, Guangdong, Peoples R China
2.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China
关键词： Palea steindachneri; Critically endangered species; Genetic resources conservation; SNP marker
期刊名称：CONSERVATION GENETICS RESOURCES （ 影响因子：1.1； 五年影响因子：0.7 ）
ISSN： 1877-7252
年卷期： 2024 年
页码：
收录情况： SCI
摘要： The Wattle-necked Softshell Turtle (Palea steindachneri) is the only species in the genus Palea, and is listed as a critically endangered species by IUCN Red List due to the extreme decline in its natural populations as a result of human capture and trade activities. However, the lack of studies on molecular markers is not conducive to the genetic diversity assessment and population conservation of P. steindachneri. Here, a total of 68 novel polymorphic SNP markers were developed and characterized based on whole-genome sequencing of P. steindachneri. The observed heterozygosity, expected heterozygosity, and polymorphism information content of the 68 SNP markers ranged from 0.1250 to 0.6875, 0.3047 to 0.5000, and 0.2583 to 0.3750, respectively. Only five SNPs significantly deviated from the Hardy-Weinberg equilibrium (PHWE<0.05). These novel polymorphic SNP markers will be useful for future genetic management and population conservation of P. steindachneri.
- 相关文献
作者其他论文 更多>>
-
Comparison of toxic effects of phenanthrene and perfluorooctane sulfonate on Chinese tongue sole Cynoglossus semilaevis larva in a muti-biomarker approach
作者：Zhang, Zhe;Duan, Yafei;Zhang, Linbao;Tian, Fei;Xiong, Qian;Chen, Haigang;Xia, Bin
关键词：Cynoglossus semilaevis; Phenanthrene; Perfluorooctane sulfonate; Cytochrome P450; Antioxidant enzymes; Nuclear hormone receptor
-
Enhanced virulence of Acinetobacter johnsonii at low temperatures induces acute immune response and systemic infection in American bullfrogs (Aquarana catesbeiana)
作者：Lin, Han;Sun, Jingyang;Li, Hua;Chen, Kesong;Qin, Zhendong;Jiang, Biao;Li, Wei;Su, Youlu;Lin, Li;Liu, Chun;Wang, Qing;Wang, Qing
关键词：Cold stress; Virulence genes; Amphibian disease; Immune response; Systemic infection
-
Genetic Diversity and Population Structure of the Chinese Three-Keeled Pond Turtle (Mauremys reevesii)
作者：Zhou, Chenyao;Zhu, Xinping;Zhao, Bo;Zhou, Chenyao;Xu, Haoyang;Liu, Haiyang;Li, Jipeng;Li, Wei;Hong, Xiaoyou;Chen, Chen;Ji, Liqin;Zhu, Xinping;Liu, Xiaoli;Xu, Haoyang;Li, Jipeng;Li, Wei;Zhu, Xinping;Liu, Xiaoli
关键词：
Mauremys reevesii ; population genomics; population structure; whole-genome resequencing -
Proteomic profiling of Ruditapes philippinarum gills exposed to triazophos: Insights into oxidative stress, cytoskeletal alterations, protein homeostasis and energy metabolism enhancement
作者：Ma, Jingjing;Tian, Fei;Sun, Wei;Zhang, Zhe;Chen, Haigang;Zhang, Linbao;Ma, Jingjing
关键词：Ruditapes philippinarum; Proteomic analysis; Organophosphorus pesticide; Gills
-
A chromosome-level reference genome assembly of the Small snakehead (Channa asiatica)
作者：Liu, Haiyang;Liu, Jiafeng;Cui, Tongxin;Zhang, Jin;Luo, Qing;Fei, Shuzhan;Chen, Kunci;Zhu, Xinping;Ou, Mi;Zhao, Jian;Liu, Haiyang;Liu, Jiafeng;Zhang, Jin;Cui, Tongxin
关键词：
-
Frog virus 3: Prevalence survey and quantitative analysis in American bullfrogs using TaqMan MGB probe real-time fluorescence quantitative PCR
作者：Li, Hua;Liu, Xiaobing;Sun, Jingyang;Lin, Han;Chen, Kesong;Hu, Yueming;Jiang, Mengzhen;Jiang, Biao;Li, Wei;Su, Youlu;Liu, Chun;Wang, Qing;Wang, Qing
关键词：Aquarana catesbeiana; Frog virus 3; TaqMan-MGB real-time PCR; Virus load; Prevalence survey
-
A metabolic enzyme-photosynthetic machinery involved in the co-metabolism of enrofloxacin and ciprofloxacin by Chlorella pyrenoidosa
作者：Wu, Hengyu;Xiong, Qian;Tian, Fei;Chen, Haigang;Wu, Hengyu;Wang, Yichun;Xie, Fengqi;Ma, Jiaru;Tang, Qinglin;Chen, Yanfen;Sun, Yuehong;Li, Hao;Liu, Yousheng;Ying, Guangguo;Wu, Hengyu;Wang, Yichun;Xie, Fengqi;Ma, Jiaru;Tang, Qinglin;Chen, Yanfen;Sun, Yuehong;Li, Hao;Liu, Yousheng;Ying, Guangguo
关键词：Fluoroquinolones; Co-metabolism; Microalgae; Transformation pathway; Key functional genes
