The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights
文献类型: 外文期刊
作者: Shao, Changwei 1 ; Sun, Shuai 3 ; Liu, Kaiqiang 1 ; Wang, Jiahao 3 ; Li, Shuo 1 ; Liu, Qun 3 ; Deagle, Bruce E. 7 ; Seim, Inge 9 ; Biscontin, Alberto 10 ; Wang, Qian 1 ; Liu, Xin 4 ; Kawaguchi, So 8 ; Liu, Yalin 3 ; Jarman, Simon 14 ; Wang, Yue 4 ; Wang, Hong-Yan 1 ; Huang, Guodong 4 ; Hu, Jiang 17 ; Feng, Bo 1 ; Pitta, Cristiano De 10 ; Liu, Shanshan 3 ; Wang, Rui 1 ; Ma, Kailong 4 ; Ying, Yiping 19 ; Sales, Gabrielle 10 ; Sun, Tao 3 ; Wang, Xinliang 19 ; Zhang, Yaolei 3 ; Zhao, Yunxia 19 ; Pan, Shanshan 3 ; Hao, Xiancai 1 ; Wang, Yang 4 ; Xu, Jiakun 1 ; Yue, Bowen 1 ; Sun, Yanxu 1 ; Zhang, He 4 ; Xu, Mengyang 3 ; Liu, Yuyan 1 ; Jia, Xiaodong 20 ; Zhu, Jiancheng 19 ; Liu, Shufang 1 ; Ruan, Jue 21 ; Zhang, Guojie 4 ; Yang, Huanming 4 ; Xu, Xun 3 ; Wang, Jun 3 ; Zhao, Xianyong 1 ; Meyer, Bettina 24 ; Fan, Guangyi 3 ;
作者机构: 1.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Natl Key Lab Mariculture Biobreeding & Sustainable, Qingdao 266071, Shandong, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266237, Shandong, Peoples R China
3.BGI Shenzhen, BGI Qingdao, Qingdao 266555, Shandong, Peoples R China
4.BGI Shenzhen, Shenzhen 518083, Guangdong, Peoples R China
5.Univ Chinese Acad Sci, Coll Life Sci, Beijing 100049, Peoples R China
6.Univ Copenhagen, Dept Biol, DK-2100 Copenhagen, Denmark
7.Commonwealth Sci & Ind Res Org CSIRO, Australian Natl Fish Collect, Natl Res Collect Australia, Hobart, Tas 7000, Australia
8.Australian Antarctic Div, Channel Highway, Kingston, Tas 7050, Australia
9.Nanjing Normal Univ, Coll Life Sci, Integrat Biol Lab, Nanjing 210023, Jiangsu, Peoples R China
10.Univ Padua, Dept Biol, I-35121 Padua, Italy
11.BGI Beijing, Beijing 102601, Peoples R China
12.BGI Shenzhen, State Key Lab Agr Genom, Shenzhen 518083, Peoples R China
13.Murdoch Univ, State Agr Biotechnol Ctr, Ctr Crop & Food Innovat, Murdoch, WA 6150, Australia
14.Curtin Univ, Sch Mol & Life Sci, Perth, WA 6009, Australia
15.Univ Macau, State Key Lab Qual Res Chinese Med, Macau 999078, Peoples R China
16.Univ Macau, Inst Chinese Med Sci, Macau 999078, Peoples R China
17.Next Biosci Inst, Wuhan 430073, Hubei, Peoples R China
18.BGI Shenzhen, China Natl GeneBank, Shenzhen 518120, Peoples R China
19.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Key Lab Sustainable Dev Polar Fisheries, Minist Agr & Rural Affairs, Qingdao 266071, Shandong, Peoples R China
20.Liaocheng Peoples Hosp, Joint Lab Translat Med Res, Liaocheng 252000, Shandong, Peoples R China
21.Chinese Acad Agr Sci, Agr Genom Inst, Shenzhen 518120, Guangdong, Peoples R China
22.Univ Copenhagen, Villum Ctr Biodivers Genom, Dept Biol, Sect Ecol & Evolut, DK-2200 Copenhagen, Denmark
23.James D Watson Inst Genome Sci, Hangzhou 310058, Peoples R China
24.Helmholtz Ctr Polar & Marine Res, Sect Polar Biol Oceanog, Alfred Wegener Inst, Bremerhaven, Germany
25.Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm, D-26111 Oldenburg, Germany
26.Carl von Ossietzky Univ Oldenburg, Helmholtz Inst Funct Marine Biodivers HIFMB, D-26129 Oldenburg, Germany
27.BGI Shenzhen, Lars Bolund Inst Regenerat Med, Qingdao Europe Adv Inst Life Sci, BGI Qingdao, Shenzhen 518120, Peoples R China
期刊名称:CELL ( 影响因子:64.5; 五年影响因子:57.5 )
ISSN: 0092-8674
年卷期: 2023 年 186 卷 6 期
页码:
收录情况: SCI
摘要: Antarctic krill (Euphausia superba) is Earth's most abundant wild animal, and its enormous biomass is vital to the Southern Ocean ecosystem. Here, we report a 48.01-Gb chromosome-level Antarctic krill genome, whose large genome size appears to have resulted from inter-genic transposable element expansions. Our assem-bly reveals the molecular architecture of the Antarctic krill circadian clock and uncovers expanded gene families associated with molting and energy metabolism, providing insights into adaptations to the cold and highly seasonal Antarctic environment. Population-level genome re-sequencing from four geographical sites around the Antarctic continent reveals no clear population structure but highlights natural selection associated with environmental variables. An apparent drastic reduction in krill population size 10 mya and a subsequent rebound 100 thousand years ago coincides with climate change events. Our findings uncover the genomic basis of Antarctic krill adaptations to the Southern Ocean and provide valuable resources for future Antarctic research.
- 相关文献
作者其他论文 更多>>
-
Global economic costs of invasions related to aquaculture: Addressing knowledge gaps and underestimated expenses
作者:Jiang, Xiaoming;Zheng, Peng;Sun, Zhiwei;Wang, Jun;Ren, Lei;Soto, Ismael;Oficialdegui, Francisco J.;Haubrock, Phillip J.;Gu, Dangen;Haubrock, Phillip J.;Haubrock, Phillip J.;Oficialdegui, Francisco J.;Ji, Lei
关键词:Biological invasion; Economic impacts; Introduction pathway; Invasive species; Global assessment
-
Characterization of natural and anthropogenic dissolved organic matter in the yangtze river basin using FT-ICR MS
作者:Ning, Cuiping;Ning, Cuiping;Sun, Shuai;Gao, Yuan;Zhang, Haijun;Chen, Jiping;Geng, Ningbo;Sun, Shuai;Xie, Huaijun;Wu, Lidong
关键词:Dissolved organic matter; FT-ICR MS; Yangtze River Basin; In-house database; Non-targeted analysis
-
Flow Velocity Modulates Growth, Oxidative Stress, and Transcriptomic Responses in Spotted Sea Bass (Lateolabrax maculatus)
作者:Li, Shuo;Wang, Qian;Liu, Baoliang;Shao, Changwei;Li, Shuo;Liu, Yuyan;Wang, Qian;Zhu, Zhiwen;Li, Weijing;Li, Chen;Fei, Fan;Liu, Baoliang;Shao, Changwei;Liu, Yuyan;Wang, Qian;Shao, Changwei
关键词:Spotted sea bass; Flow velocity; Oxidative stress; Lipid metabolism; Transcriptomics
-
DNA Barcode and Correct Scientific Name of Golden Pompano, an Important Marine Aquaculture Fish Species in China
作者:Li, Ang;An, Changting;Wang, Huan;Che, Shuai;Liu, Shufang;Zhuang, Zhimeng;Li, Ang;An, Changting;Wang, Huan;Che, Shuai;Liu, Shufang
关键词:golden pompano;
Trachinotus ovatus ; DNA barcoding; synonym; cryptic species -
Near complete genome assembly of Yadong trout (Salmo trutta)
作者:Li, Chen;Han, Shenglei;Li, Shuo;Liu, Kaiqiang;Liu, Yuyan;Wang, Hong-yan;Wang, Qian;Liu, Changlin;Shao, Changwei;Li, Chen;Li, Chen;Han, Shenglei;Li, Shuo;Liu, Kaiqiang;Liu, Yuyan;Wang, Hong-yan;Wang, Qian;Liu, Changlin;Shao, Changwei;Liu, Kaiqiang;Liu, Yuyan;Wang, Hong-yan;Wang, Qian;Shao, Changwei
关键词:
-
Identifying priority habitat for future spatial conservation and management decisions of East Asian finless porpoise within Miaodao Archipelago waters, China
作者:Li, Yongtao;Cheng, Zhaolong;Zuo, Tao;Niu, Mingxiang;Wang, Jun;Li, Yongtao;Cheng, Zhaolong;Zuo, Tao;Niu, Mingxiang;Wang, Jun;Wu, Zhongxun;Chu, Yongzhong
关键词:East Asian finless porpoise; Core density area; Kernel density estimate; Spatial use; Cetacean conservation
-
Response of diatoms to environmental changes in the Porphyra cultivation system in Haizhou Bay using GBT model and GAM
作者:Chen, Shuo;Han, Haibin;Chen, Shuo;Yu, Jinchen;Sun, Tao;Zhou, Jin
关键词:Phytoplankton community structure; Diatoms; GBT model; GAM; Haizhou Bay; Porphyra cultivation



