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The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights

文献类型: 外文期刊

作者: Shao, Changwei 1 ; Sun, Shuai 3 ; Liu, Kaiqiang 1 ; Wang, Jiahao 3 ; Li, Shuo 1 ; Liu, Qun 3 ; Deagle, Bruce E. 7 ; Seim, Inge 9 ; Biscontin, Alberto 10 ; Wang, Qian 1 ; Liu, Xin 4 ; Kawaguchi, So 8 ; Liu, Yalin 3 ; Jarman, Simon 14 ; Wang, Yue 4 ; Wang, Hong-Yan 1 ; Huang, Guodong 4 ; Hu, Jiang 17 ; Feng, Bo 1 ; Pitta, Cristiano De 10 ; Liu, Shanshan 3 ; Wang, Rui 1 ; Ma, Kailong 4 ; Ying, Yiping 19 ; Sales, Gabrielle 10 ; Sun, Tao 3 ; Wang, Xinliang 19 ; Zhang, Yaolei 3 ; Zhao, Yunxia 19 ; Pan, Shanshan 3 ; Hao, Xiancai 1 ; Wang, Yang 4 ; Xu, Jiakun 1 ; Yue, Bowen 1 ; Sun, Yanxu 1 ; Zhang, He 4 ; Xu, Mengyang 3 ; Liu, Yuyan 1 ; Jia, Xiaodong 20 ; Zhu, Jiancheng 19 ; Liu, Shufang 1 ; Ruan, Jue 21 ; Zhang, Guojie 4 ; Yang, Huanming 4 ; Xu, Xun 3 ; Wang, Jun 3 ; Zhao, Xianyong 1 ; Meyer, Bettina 24 ; Fan, Guangyi 3 ;

作者机构: 1.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Natl Key Lab Mariculture Biobreeding & Sustainable, Qingdao 266071, Shandong, Peoples R China

2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266237, Shandong, Peoples R China

3.BGI Shenzhen, BGI Qingdao, Qingdao 266555, Shandong, Peoples R China

4.BGI Shenzhen, Shenzhen 518083, Guangdong, Peoples R China

5.Univ Chinese Acad Sci, Coll Life Sci, Beijing 100049, Peoples R China

6.Univ Copenhagen, Dept Biol, DK-2100 Copenhagen, Denmark

7.Commonwealth Sci & Ind Res Org CSIRO, Australian Natl Fish Collect, Natl Res Collect Australia, Hobart, Tas 7000, Australia

8.Australian Antarctic Div, Channel Highway, Kingston, Tas 7050, Australia

9.Nanjing Normal Univ, Coll Life Sci, Integrat Biol Lab, Nanjing 210023, Jiangsu, Peoples R China

10.Univ Padua, Dept Biol, I-35121 Padua, Italy

11.BGI Beijing, Beijing 102601, Peoples R China

12.BGI Shenzhen, State Key Lab Agr Genom, Shenzhen 518083, Peoples R China

13.Murdoch Univ, State Agr Biotechnol Ctr, Ctr Crop & Food Innovat, Murdoch, WA 6150, Australia

14.Curtin Univ, Sch Mol & Life Sci, Perth, WA 6009, Australia

15.Univ Macau, State Key Lab Qual Res Chinese Med, Macau 999078, Peoples R China

16.Univ Macau, Inst Chinese Med Sci, Macau 999078, Peoples R China

17.Next Biosci Inst, Wuhan 430073, Hubei, Peoples R China

18.BGI Shenzhen, China Natl GeneBank, Shenzhen 518120, Peoples R China

19.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Key Lab Sustainable Dev Polar Fisheries, Minist Agr & Rural Affairs, Qingdao 266071, Shandong, Peoples R China

20.Liaocheng Peoples Hosp, Joint Lab Translat Med Res, Liaocheng 252000, Shandong, Peoples R China

21.Chinese Acad Agr Sci, Agr Genom Inst, Shenzhen 518120, Guangdong, Peoples R China

22.Univ Copenhagen, Villum Ctr Biodivers Genom, Dept Biol, Sect Ecol & Evolut, DK-2200 Copenhagen, Denmark

23.James D Watson Inst Genome Sci, Hangzhou 310058, Peoples R China

24.Helmholtz Ctr Polar & Marine Res, Sect Polar Biol Oceanog, Alfred Wegener Inst, Bremerhaven, Germany

25.Carl von Ossietzky Univ Oldenburg, Inst Chem & Biol Marine Environm, D-26111 Oldenburg, Germany

26.Carl von Ossietzky Univ Oldenburg, Helmholtz Inst Funct Marine Biodivers HIFMB, D-26129 Oldenburg, Germany

27.BGI Shenzhen, Lars Bolund Inst Regenerat Med, Qingdao Europe Adv Inst Life Sci, BGI Qingdao, Shenzhen 518120, Peoples R China

期刊名称:CELL ( 影响因子:64.5; 五年影响因子:57.5 )

ISSN: 0092-8674

年卷期: 2023 年 186 卷 6 期

页码:

收录情况: SCI

摘要: Antarctic krill (Euphausia superba) is Earth's most abundant wild animal, and its enormous biomass is vital to the Southern Ocean ecosystem. Here, we report a 48.01-Gb chromosome-level Antarctic krill genome, whose large genome size appears to have resulted from inter-genic transposable element expansions. Our assem-bly reveals the molecular architecture of the Antarctic krill circadian clock and uncovers expanded gene families associated with molting and energy metabolism, providing insights into adaptations to the cold and highly seasonal Antarctic environment. Population-level genome re-sequencing from four geographical sites around the Antarctic continent reveals no clear population structure but highlights natural selection associated with environmental variables. An apparent drastic reduction in krill population size 10 mya and a subsequent rebound 100 thousand years ago coincides with climate change events. Our findings uncover the genomic basis of Antarctic krill adaptations to the Southern Ocean and provide valuable resources for future Antarctic research.

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