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Comparative genome-wide analysis of circular RNAs in Brassica napus L.: target-site versus non-target-site resistance to herbicide stress

文献类型： 外文期刊

作者： Guo, Yue 1 ; Wang, Ting 1 ; Lu, Xinyu 1 ; Li, Weilong 1 ; Lv, Xinlei 1 ; Peng, Qi 1 ; Zhang, Jiefu 1 ; Gao, Jianqin 1 ; Hu, Maolong 1 ;

作者机构： 1.Jiangsu Acad Agr Sci, Inst Ind Crops, Nanjing, Peoples R China

期刊名称：THEORETICAL AND APPLIED GENETICS （ 影响因子：4.4； 五年影响因子：5.0 ）

ISSN： 0040-5752

年卷期： 2024 年 137 卷 7 期

页码：

收录情况： SCI

摘要： Circular RNAs (circRNAs), a class of non-coding RNA molecules, are recognized for their unique functions; however, their responses to herbicide stress in Brassica napus remain unclear. In this study, the role of circRNAs in response to herbicide treatment was investigated in two rapeseed cultivars: MH33, which confers non-target-site resistance (NTSR), and EM28, which exhibits target-site resistance (TSR). The genome-wide circRNA profiles of herbicide-stressed and non-stressed seedlings were analyzed. The findings indicate that NTSR seedlings exhibited a greater abundance of circRNAs, shorter lengths of circRNAs and their parent genes, and more diverse functions of parent genes compared with TSR seedlings. Compared to normal-growth plants, the herbicide-stressed group exhibited similar trends in the number of circRNAs, functions of parent genes, and differentially expressed circRNAs as observed in NTSR seedlings. In addition, a greater number of circRNAs that function as competing microRNA (miRNA) sponges were identified in the herbicide stress and NTSR groups compared to the normal-growth and TSR groups, respectively. The differentially expressed circRNAs were validated by qPCR. The differntially expressed circRNA-miRNA networks were predicted, and the mRNAs targeted by these miRNAs were annotated. Our results suggest that circRNAs play a crucial role in responding to herbicide stress, exhibiting distinct responses between NTSR and TSR in rapeseed. These findings offer valuable insights into the mechanisms underlying herbicide resistance in rapeseed.

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