New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update
文献类型: 外文期刊
作者: Huang, Fangfang 1 ; Jiang, Yingru 1 ; Chen, Tiantian 1 ; Li, Haoran 1 ; Fu, Mengjia 1 ; Wang, Yazhou 1 ; Xu, Yufang 1 ; Li, Yang 1 ; Zhou, Zhengfu 2 ; Jia, Lihua 3 ; Ouyang, Yidan 4 ; Yao, Wen 1 ;
作者机构: 1.Henan Agr Univ, Coll Life Sci, Natl Key Lab Wheat & Maize Crop Sci, Zhengzhou 450002, Peoples R China
2.Henan Acad Agr Sci, Henan Acad Crop Mol Breeding, Zhengzhou 450002, Peoples R China
3.Henan Agr Univ, Coll Agron, Natl Key Lab Wheat & Maize Crop Sci, Zhengzhou 450002, Peoples R China
4.Huazhong Agr Univ, Natl Ctr Plant Gene Res, Natl Key Lab Crop Genet Improvement, Wuhan 430070, Peoples R China
关键词: Rice; Oryza sativa; Functionally characterized genes; Functional genomics; Database
期刊名称:RICE ( 影响因子:5.638; 五年影响因子:6.097 )
ISSN: 1939-8425
年卷期: 2022 年 15 卷 1 期
页码:
收录情况: SCI
摘要: As a major food crop and model organism, rice has been mostly studied with the largest number of functionally characterized genes among all crops. We previously built the funRiceGenes database including similar to 2800 functionally characterized rice genes and similar to 5000 members of different gene families. Since being published, the funRiceGenes database has been accessed by more than 54,400 users with over 540,000 pageviews. The funRiceGenes database has been continuously updated with newly cloned rice genes and newly published literature, based on the progress of rice functional genomics studies. Up to Nov 2021, similar to 4100 functionally characterized rice genes and similar to 6000 members of different gene families were collected in funRiceGenes, accounting for 22.3% of the 39,045 annotated protein-coding genes in the rice genome. Here, we summarized the update of the funRiceGenes database with new data and new features in the last 5 years.
- 相关文献
作者其他论文 更多>>
-
Study on the Influence of Sorghum Waxy Characteristics on the Fermentation and Flavor of Sauce-Aroma Baijiu
作者:Ren, Qingfan;Jiang, Feng;Zhang, Qiaoling;Wang, Li;Li, Lei;Yang, Fan;Ren, Qingfan;Jiang, Feng;Zhang, Qiaoling;Wang, Li;Li, Lei;Yang, Fan;Zhou, Zhengfu;Zhao, Zhenyu
关键词:Microbial communities; raw materials; starch crops
-
Unveiling Novel Genetic Loci and Superior Alleles for Nickel Accumulation in Wheat via Genome-Wide Association Study
作者:Shi, Xia;Geng, Shenghui;Hou, Jinna;Shi, Taotao;Qin, Maomao;Li, Wenxu;Dai, Ziju;Zhou, Zhengfu;Lei, Zhensheng;Zhang, Minghui
关键词:hexaploid wheat (
Triticum aestivum L.); Ni accumulation; GWAS; superior and inferior alleles -
Genome-Wide Association Analysis and Candidate Gene Prediction of Wheat Grain Copper Concentration
作者:Zou, Zhaojun;Liu, Xiaofei;Li, Fengfeng;Man, Jianguo;Liu, Xiaofei;Hou, Jinna;Zhou, Zhengfu;Lei, Zhensheng;Jing, Xiaojing;Peng, Yanchun;Peng, Yanchun
关键词:common wheat; copper; ML-GWAS; candidate genes
-
Chromosome-level genome assembly and characterization of Kaixuan 016: A high-oleic peanut variety with improved agronomic traits developed through gamma-radiation-assisted breeding
作者:Ren, Li;Deng, Li;Guo, Minjie;Li, Yang;Yin, Junhua;Miao, Jianli;Li, Shaowei;Hu, Junping;Liu, Wenhao;Dong, Wenzhao;Fang, Yuanjin;Tian, Xiangyu;Zheng, Zheng;Huang, Bingyan;Zhang, Xinyou
关键词:Arachis hypogaea; De novo sequencing; Re-sequencing; High-oleic peanuts; Gamma radiation; Genome assembly
-
Multi-omics strategy reveals potential role of antimicrobial resistance and virulence factor genes responsible for Simmental diarrheic calves caused by Escherichia coli
作者:Shi, Zhihai;Lan, Yali;Wang, Yazhou;Yan, Xiangzhou;Xu, Zhaoxue;Ma, Xiaoya;Deng, Tingxian;Hassan, Faiz-ul;Rushdi, Hossam E.;Wang, Wenjia
关键词:antibiotic resistance genes; diarrhea; metagenome; metabolomics; virulence factor genes
-
Identification of the Brassinazole-Resistant (BZR) Gene Family in Wheat (Triticum aestivum L.) and the Molecular Cloning and Functional Characterization of TaBZR2.1
作者:Zhang, Yan;Qin, Jingzi;Hou, Jinna;Liu, Congcong;Geng, Shenghui;Qin, Maomao;Li, Wenxu;Dai, Ziju;Wu, Zhengqing;Lei, Zhensheng;Zhou, Zhengfu;Qin, Jingzi;Lei, Zhensheng;Lei, Zhensheng;Zhou, Zhengfu
关键词:wheat; transcription factor;
BZR ; expression profiles -
Genome-wide association study and development of molecular markers for yield and quality traits in peanut (Arachis hypogaea L.)
作者:Guo, Minjie;Deng, Li;Gu, Jianzhong;Miao, Jianli;Yin, Junhua;Li, Yang;Lu, Zhenhua;Li, Shaowei;Hu, Junping;Ren, Li;Fang, Yuanjin;Huang, Bingyan;Sun, Ziqi;Qi, Feiyan;Dong, Wenzhao;Zhang, Xinyou
关键词:Peanut; Yield traits; Quality traits; Re-sequencing; Genome-wide association study (GWAS); Kompetitive allele-specific PCR (KASP) marker



