文献类型： 外文期刊
作者： Tian, Zhitao 1 ; Hu, Xin 1 ; Xu, Yingying 1 ; Liu, Mengmeng 1 ; Liu, Hongbo 1 ; Li, Dongqin 1 ; Hu, Lisong 4 ; Wei, Guozhu 5 ; Chen, Wei 1 ;
作者机构： 1.Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan 430070, Peoples R China
2.Huazhong Agr Univ, Natl Ctr Plant Gene Res Wuhan, Wuhan 430070, Peoples R China
3.Hubei Hongshan Lab, Wuhan 430070, Peoples R China
4.Chinese Acad Trop Agr Sci, Spice & Beverage Res Inst, Wanning 571533, Hainan, Peoples R China
5.BioBioPha Co Ltd, Kunming 650201, Peoples R China
期刊名称：NUCLEIC ACIDS RESEARCH （ 影响因子：14.9； 五年影响因子：16.4 ）
ISSN： 0305-1048
年卷期： 2023 年
页码：
收录情况： SCI
摘要： The Plant Metabolome Hub (PMhub), available at https://pmhub.org.cn, is a valuable resource designed to provide scientists with comprehensive information on plant metabolites. It offers extensive details about their reference spectra, genetic foundations, chemical reactions, metabolic pathways and biological functions. The PMhub contains chemical data for 188 837 plant metabolites gathered from various sources, with 1 467 041 standard/in-silico high-resolution tandem mass-spectrometry (HRMS/MS) spectra corresponding to these metabolites. Beyond its extensive literature-derived data, PMhub also boasts a sizable collection of experimental metabolites; it contains 144 366 detected features in 10 typical plant species, with 16 423 successfully annotated by using standard/in-silico HRMS/MS data, this collection is further supplemented with thousands of features gathered from reference metabolites. For each metabolite, the PMhub enables the reconstructed of a simulated network based on structural similarities and existing metabolic pathways. Unlike previous plant-specific metabolome databases, PMhub not only contains a vast amount of metabolic data but also assembles the corresponding genomic and/or transcriptomic information, incorporating multiple methods for the comprehensive genetic analysis of metabolites. To validate the practicality, we verified a synthetic pathway for N-p-coumaroyltyramine by in vitro enzymatic activity experiments. In summary, the robust functionality provided by the PMhub will make it an indispensable tool for studying plant metabolomics. Graphical Abstract
- 相关文献
作者其他论文 更多>>
-
High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development
作者：Shao, Lei;Zhang, Zhiyuan;Lu, Hejun;Hu, Wanying;Zhao, Ting;Guan, Xueying;Hu, Yan;Zhang, Tianzhen;Fang, Lei;Shao, Lei;Zhang, Zhiyuan;Zhao, Ting;Guan, Xueying;Hu, Yan;Zhang, Tianzhen;Fang, Lei;Yang, Guangsui;Shen, Zhen;Huang, Surong;Fan, Rui;Hu, Lisong;Wang, Kai
关键词：Malvaceae species; genome evolution; ancestral karyotype; fiber differentiation
-
The complex hexaploid oil-Camellia genome traces back its phylogenomic history and multi-omics analysis of Camellia oil biosynthesis
作者：Zhu, Huaguo;Li, Wenying;Wu, Lan;Cheng, Xinqi;Tang, Xinxin;Yang, Chaochen;Hu, Xiaoming;Wang, Fuqiu;Xu, Zhongping;Wang, Guanying;Ge, Xianhong;Liu, Jinxuan;Zhang, Xianlong;Jin, Shuangxia;Hu, Lisong;Cheng, Junyong;Chen, Wei;Li, Qiang;Chen, Wei;Li, Qiang;Xue, Fei;Liu, Feng;Lindsey, Keith;Ding, Fang;Hu, Haiyan
关键词：Oil-Camellia (Camellia oleifera); hexaploid; chromosome-scale genome assembly; whole-genome duplication; camellia oil biosynthesis
-
Current perspectives on the regulatory mechanisms of sucrose accumulation in sugarcane
作者：Mehdi, Faisal;Wickramasinghe, Kamal Priyananda;Zhao, Peifang;Lu, Xin;Lin, Xiuqin;Xu, Chaohua;Liu, Hongbo;Li, Xujuan;Liu, Xinlong;Mehdi, Faisal;Galani, Saddia;Wickramasinghe, Kamal Priyananda
关键词：Sucrose metabolizing enzymes; Source-sink communication; Post-transcriptional factors; Sucrose accumulation; Sugarcane genetic engineering
-
The chromosome-scale reference genome of mirid bugs (Adelphocoris suturalis) genome provides insights into omnivory, insecticide resistance, and survival adaptation
作者：Xu, Zhongping;Wang, Guanying;Zhu, Mingju;Wang, Ying;Zhang, Guangyu;Zhang, Can;Zhou, Yi;Yuan, Daojun;Chen, Taiyu;Ma, Weihua;Zhang, Xianlong;Jin, Shuangxia;Luo, Jing;Hu, Lisong;Liang, Sijia;Li, Bo;Huang, Xingxing;Chen, Lizhen;Gao, Wei;Lindsey, Keith;Ding, Fang
关键词：Adelphocoris suturalis; Chromosome-scale reference genome; Candidate effectors; Omnivory; Detoxification
-
Strigolactones in Sugarcane Growth and Development
作者：Zan, Fenggang;Wu, Zhuandi;Hu, Xin;Feng, Lu;Liu, Xinlong;Liu, Jiayong;Zhao, Liping;Wu, Caiwen;Guo, Jiawen;Wang, Wenzhi;Zhang, Shuzhen
关键词：DWARF27; tilling; sugarcane; strigolactones biosynthesis; ScD27; 2
-
Comparative analysis of the chloroplast genomes of eight Piper species and insights into the utilization of structural variation in phylogenetic analysis
作者：Li, Jing;Fan, Rui;Hu, Lisong;Su, Fan;Hao, Chaoyun;Li, Jing;Fan, Rui;Hu, Lisong;Su, Fan;Hao, Chaoyun;Li, Jing;Fan, Rui;Hu, Lisong;Su, Fan;Hao, Chaoyun;Li, Jing;Fan, Rui;Hu, Lisong;Su, Fan;Hao, Chaoyun;Xu, Jintao
关键词：piper; chloroplast genome; phylogenetic relationships; DNA barcode; high degree of sequence variations
-
Chromosome-level genome assembly of the Muscovy duck provides insight into fatty liver susceptibility
作者：Xu, Ming-Min;Lv, Wan-Yue;Adeola, Adeniyi C.;Zhang, Ya-Ping;Peng, Min-Sheng;Xu, Ming-Min;Lv, Wan-Yue;Adeola, Adeniyi C.;Zhang, Ya-Ping;Peng, Min-Sheng;Xu, Ming-Min;Li, Lian-Wei;Ma, Zhanshan Sam;Zhang, Ya-Ping;Peng, Min-Sheng;Gu, Li-Hong;Lv, Wan-Yue;Zhang, Ya-Ping;Duan, Sheng-Chang;Du, Yuan;Li, Lian-Wei;Ma, Zhanshan Sam;Lu, Li-Zhi;Zeng, Tao;Hou, Zhuo-Cheng;Hou, Zhuo-Cheng;Chen, Wei;Dong, Yang;Chen, Wei;Dong, Yang;Han, Jian-Lin;Han, Jian-Lin;Xu, Tie-Shan;Zhang, Ya-Ping;Peng, Min-Sheng
关键词：Fatty liver; Muscovy duck; Genome assembly; Evolutionary by-product; Accelerated CNEs
