您好，欢迎访问中国水产科学研究院 机构知识库！
中国水产科学研究院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

The complete mitochondrial genome sequence and gene organization of the mud crab (Scylla paramamosain) with phylogenetic consideration

文献类型： 外文期刊

作者： Ma, Hongyu 1 ; Ma, Chunyan 1 ; Li, Xincang 1 ; Xu, Zhen 1 ; Feng, Nana 1 ; Ma, Lingbo 1 ;

作者机构： 1.Chinese Acad Fishery Sci, East China Sea Fisheries Res Inst, Key Lab East China Sea & Ocean Fishery Resources, Minist Agr, Shanghai 200090, Peoples R China

关键词： 454 sequencing;Gene content;Mitochondrial genome;Phylogenetic relationship;Scylla paramamosain

期刊名称：GENE （ 影响因子：3.688； 五年影响因子：3.329 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The complete mitochondrial genome is of great importance for better understanding the genome-level characteristics and phylogenetic relationships among related species. In the present study, we determined the complete mitochondrial genome DNA sequence of the mud crab (Scylla paramamosain) by 454 deep sequencing and Sanger sequencing approaches. The complete genome DNA was 15,824. bp in length and contained a typical set of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes and a putative control region (CR). Of 37 genes, twenty-three were encoded by the heavy strand (H-strand), while the other ones were encoded by light strand (L-strand). The gene order in the mitochondrial genome was largely identical to those obtained in most arthropods, although the relative position of gene tRNAHis differed from other arthropods. Among 13 protein-coding genes, three (ATPase subunit 6 (ATP6), NADH dehydrogenase subunits 1 (ND1) and ND3) started with a rare start codon ATT, whereas, one gene cytochrome c oxidase subunit I (COI) ended with the incomplete stop codon TA. All 22 tRNAs could fold into a typical clover-leaf secondary structure, with the gene sizes ranging from 63 to 73. bp. The phylogenetic analysis based on 12 concatenated protein-coding genes showed that the molecular genetic relationship of 19 species of 11 genera was identical to the traditional taxonomy. ? 2013 Elsevier B.V.

  • 相关文献

[1]Characterization of the complete mitochondrial genome of Portunus pelagicus with implications for phylogenomics. Ma, C. Y.,Ma, H. Y.,Ren, G. J.,Wang, W.,Chen, W.,Lu, J. X.,Zou, X.,Ma, L. B.. 2016

[2]Shotgun assembly of the mitochondrial genome from Fenneropenaeus penicillatus with phylogenetic consideration. Zhang, Dianchang,Gong, Fahui,Liu, Tiantian,Guo, Huayang,Zhang, Nan,Zhu, Kecheng,Jiang, Shigui,Gong, Fahui,Liu, Tiantian.

[3]Characterization and expression analysis of the prophenoloxidase activating factor from the mud crab Scylla paramamosain. Wang, J.,Jiang, K. J.,Zhang, F. Y.,Song, W.,Zhao, M.,Wei, H. Q.,Meng, Y. Y.,Ma, L. B.,Wang, J.,Zhao, M.,Wei, H. Q.,Meng, Y. Y.. 2015

[4]Multiplex immune-related genes expression analysis response to bacterial challenge in mud crab, Scylla paramamosain. Zhang, Fengying,Jiang, Keji,Sun, Manman,Zhang, Dan,Ma, Lingbo. 2013

[5]Improved isolation of good-quality total RNA from the optic stalk of Mud crab, Scylla paramamosain. Zhu, Houze,Pi, Yan,Jiang, Keji,Zhang, Fengying,Zhang, Dan,Ma, Lingbo,Zhang, Dan. 2012

[6]Identification of a trypsin gene from Scylla paramamosain and its expression profiling during larval development. Jiang, Keji,Zhang, Fengying,Zhang, Dan,Zhang, Yong,Qiao, Zhenguo,Ma, Lingbo,Tao, Qichang,Pi, Yan. 2011

[7]Correlation of growth-related traits and their effects on body weight of the mud crab (Scylla paramamosain). Ma, H. Y.,Ma, C. Y.,Ma, L. B.,Xu, Z.,Feng, N. N.,Qiao, Z. G.. 2013

[8]Population genetic diversity of mud crab (Scylla paramamosain) in Hainan Island of China based on mitochondrial DNA. Ma, Hongyu,Ma, Chunyan,Ma, Lingbo.

[9]Rapid detection of mud crab dicistrovirus-1 using loop-mediated isothermal amplification. Guo, Zhixun,Zhang, Di,Ma, Hongling,Su, Youlu,Feng, Juan,Xu, Liwen,Zhang, Di.

[10]Parentage assignment of the mud crab (Scylla paramamosain) based on microsatellite markers. Ma, Qunqun,Ma, Hongyu,Ma, Chunyan,Feng, Nana,Xu, Zhen,Li, Shujuan,Jiang, Wei,Qiao, Zhenguo,Ma, Lingbo,Ma, Qunqun,Ma, Hongyu,Chen, Jianhua.

[11]A novel anti-lipopolysaccharide factor SpALF6 in mud crab Scylla paramamosain exhibiting different antimicrobial activity from its single amino acid mutant. Hou, Zhi-Guo,Wang, Yuan,Fang, Wen-Hong,Zhao, Shu,Zhang, Jing-Xiao,Li, Xin-Cang,Hou, Zhi-Guo,Hui, Kaimin,Ma, Hongyu.

[12]Two transcripts of HMG-CoA reductase related with developmental regulation from Scylla paramamosain: Evidences from cDNA cloning and expression analysis. Zhao, Ming,Jiang, Keji,Song, Wei,Ma, Chunyan,Wang, Jing,Meng, Yongyong,Wei, Hongqing,Qiao, Zhenguo,Zhang, Fengying,Ma, Lingbo,Zhao, Ming,Wang, Jing,Meng, Yongyong,Wei, Hongqing,Chen, Kai.

[13]Amino Acid, Fatty Acid, and Metal Compositions in Edible Parts of Three Cultured Economic Crabs: Scylla paramamosain, Portunus trituberculatus, and Eriocheir sinensis. Jiang, Ke-Ji,Zhang, Feng-Ying,Zhang, Dan,Sun, Man-Man,Gao, Lu-Jiao,Qiao, Zhen-Guo,Ma, Ling-Bo,Pi, Yan,Jiang, Li-Li,Yu, Zhong-Li,Zhang, Dan,Sun, Man-Man.

[14]Characteristics of growth traits and their effects on body weight of G(1) individuals in the mud crab (Scylla paramamosain). Jiang, W.,Ma, H. Y.,Ma, C. Y.,Li, S. J.,Liu, Y. X.,Qiao, Z. G.,Ma, L. B.,Jiang, W.. 2014

[15]Isolation and characterization of polymorphic microsatellite loci from cDNA library of Scylla paramamosain. Ma, Chunyan,Ma, Hongyu,Ma, Lingbo,Jiang, Keji,Zhang, Fengying,Song, Wei. 2011

[16]Late Pleistocene population expansion of Scylla paramamosain along the coast of China: A population dynamic response to the Last Interglacial sea level highstand. He, Lijun,Jiang, Chaojun,Qiao, Zhenguo,Zhang, Aibing,Weese, David,Zhu, Chaodong.

[17]Comparative Transcriptome Analysis Provides Insights into Differentially Expressed Genes and Long Non-Coding RNAs between Ovary and Testis of the Mud Crab (Scylla paramamosain). Yang, Xiaolong,Lin, Fan,Wu, Qingyang,Zhang, Yueling,You, Cuihong,Liu, Wenhua,Cheng, Yinwei,Shi, Xi,Wang, Shuqi,Ma, Hongyu,Ikhwanuddin, Mhd,Li, Xincang. 2018

[18]Characterization of hemocyanin from the mud crab Scylla paramamosain and its expression analysis in different tissues, at various stages, and under Vibrio parahaemolyticus infection. Wang, J.,Zhang, F. Y.,Song, W.,Hu, J. H.,Zhao, M.,Jiang, K. J.,Ma, L. B.,Wang, J.,Hu, J. H.,Zhao, M.,Fang, Y. B.. 2015

[19]Macrophage Migration Inhibitory Factor in Mud Crab Scylla paramamosain: Molecular Cloning, Expression Profiles in Various Tissues and under Vibrio challenge. Fang, Y.,Jiang, K.,Zhang, F.,Sun, M.,Hu, J.,Ma, L.,Fang, Y.,Sun, M.,Hu, J..

[20]Isolation and Characterization of a Ferritin cDNA from the Mud Crab Scylla paramamosain. Zhang, Dan,Jiang, Keji,Zhang, Fengying,Ma, Chunyan,Shi, Yanhong,Qiao, Zhenguo,Ma, Lingbo,Zhang, Dan.

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：中国水产科学研究院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台