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A specific type of cyclin-like F-box domain gene is involved in the cryogenic autolysis of Volvariella volvacea

文献类型： 外文期刊

作者： Gong, Ming 1 ; Chen, Mingjie 1 ; Wang, Hong 1 ; Zhu, Qiuming 2 ; Tan, Qi 1 ;

作者机构： 1.Shanghai Acad Agr Sci, Natl Engn Res Ctr Edible Fungi, Key Lab Edible Fungi Resources & Utilizat South, Minist Sci & Technol,Minist Agr,Inst Edible Fungi, Shanghai 201403, Peoples R China

2.Univ Nebraska, Dept Comp Sci, Omaha, NE 68182 USA

关键词： abnormal metabolism;autolysis;gene expansion;F-box domain;Volvariella volvacea

期刊名称：MYCOLOGIA （ 影响因子：2.696； 五年影响因子：3.089 ）

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收录情况： SCI

摘要： Cryogenic autolysis is a typical phenomenon of abnormal metabolism in Volvariella volvacea. Recent studies have identified 20 significantly upregulated genes via high-throughput sequencing of the mRNAs expressed in the mycelia of V. volvacea after cold exposure. Among these significantly upregulated genes, 15 annotated genes were used for functional annotation cluster analysis. Our results showed that the cyclin-like F-box domain (FBDC) formed the functional cluster with the lowest P-value. We also observed a significant expansion of FBDC families in V. volvacea. Among these, the FBDC3 family displayed the maximal gene expansion in V. volvacea. Gene expression profiling analysis revealed only one FBDC gene in V. volvacea (FBDV1) that was significantly up-regulated, which is located in the FBDC3 family. Comparative genomics analysis revealed the homologous sequences of FBDV1 with high similarity were clustered on the same scaffold. However, FBDV1 was located far from these clusters, indicating the divergence of duplicated genes. Relative time estimation and rate test provided evidence for the divergence of FBDV1 after recent duplications. Real-time RT-PCR analysis confirmed that the expression of the FBDV1 was significantly up-regulated (P < 0.001) after cold-treatment of V. volvacea for 4 h. These observations suggest that the FBDV1 is involved in the cryogenic autolysis of V. volvacea.

  • 相关文献

[1]A newly discovered ubiquitin-conjugating enzyme E2 correlated with the cryogenic autolysis of Volvariella volvacea. Gong, Ming,Wang, Hong,Chen, Mingjie,Bao, Dapeng,Tan, Qi,Gong, Ming,Zhu, Qiuming.

[2]Identification, Analysis and Expression of a Cold-induced Gene in Volvariella volvacea. Hong Wang,Xiaohong Sun,Aiping Feng,Xiaoda Yang,Mingjie Chen,Yingjie Pan. 2012

[3]Cloning of multiple cellulase cDNAs from Volvariella volvacea and their differential expression during substrate colonization and fruiting. Ding, Shaojun,Ge, Wei,Buswell, John A..

[4]Improved fruiting of the straw mushroom (Volvariella volvacea) on cotton waste supplemented with sodium acetate. Hou, Lijuan,Li, Yu,Chen, Mingjie,Li, Zhengpeng. 2017

[5]Molecular cloning and transcriptional expression analysis of an intracellular beta-glucosidase, a family 3 glycosyl hydrolase, from the edible straw mushroom, Volvariella volvacea. Ding, Shaojun,Ge, Wei,Buswell, John A..

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[7]Application of mating type genes in molecular marker-assisted breeding of the edible straw mushroom Volvariella volvacea. Wang, Hong,Chen, Mingjie,Xue, Chengqin,Li, Zhengpeng,Bao, Dapeng,Wang, Hong,Chen, Mingjie,Xue, Chengqin,Li, Zhengpeng,Bao, Dapeng,Wang, Hong,Chen, Mingjie,Xue, Chengqin,Li, Zhengpeng,Bao, Dapeng,Xiong, Dengkun,Wang, Hong,Chen, Mingjie,Xue, Chengqin,Li, Zhengpeng,Bao, Dapeng,Xiong, Dengkun,Bian, Yinbing.

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