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Screening of SSR markers associated with scale cover pattern and mapped to a genetic linkage map of common carp (Cyprinus carpio L.)

文献类型： 外文期刊

作者： Xiao, Tongqian 1 ; Lu, Cuiyun 1 ; Xu, Yulan 1 ; Li, Chao 1 ; Zheng, Xianhu 1 ; Cao, Dingchen 1 ; Cheng, Lei 1 ; Mahboob, 1 ;

作者机构： 1.Chinese Acad Fisheries Sci, Heilongjiang Fisheries Res Inst, Harbin 150070, Heilongjiang, Peoples R China

2.Dalian Ocean Univ, Coll Fisheries & Life Sci, Dalian 116023, Peoples R China

3.Northeast Forestry Univ, Alkali Soil Nat Environm Sci Ctr, Harbin 150040, Peoples R China;

关键词： Common carp;Linkage map;Microsatellite markers;Scale cover pattern

期刊名称：JOURNAL OF APPLIED GENETICS （ 影响因子：3.24； 五年影响因子：2.756 ）

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收录情况： SCI

摘要： Fish scale is an attractive model in bone physiology research and is also a crucial character for breeding new varieties. Thus, it is important to identify loci in the genome associated with scale formation. In this study, 290 microsatellite markers in common carp (Cyprinus carpio L.) were selected and tested for their segregation in a full-sib mapping panel containing 96 individuals (population 1). Association analysis identified seven simple sequence repeats (SSRs) (HLJ2509, HLJ3227, HLJ3675, HLJ3766, HLJ3863, FGFR1, FGFR7) that showed significant correlation with scale cover pattern in population 1. When the seven SSRs were investigated in two other populations, seven and five SSRs were significantly correlated with scale cover pattern in population 2 (116 individuals) and population 3 (57 individuals), respectively. The exceptions were FGFR1 and HLJ3227. A genetic linkage map was constructed using the 290 SSRs and 241 SSRs were mapped into 47 linkage groups (LGs), with 2-15 markers per LG. The map spanned 2,241.7 cM, with LG sizes that varied from 1.1 to 124.9 cM. All seven markers associated with scale cover mapped into LG3. We considered that a gene cluster that affected the scale cover pattern possibly existed in LG3. By aligning the seven markers with the zebrafish (Danio rerio) genome, we identified six candidate genes (atoh1a, ptch1, bmp1a, fgfr1a, fgf17, wnt5a) that may be associated with scale formation. We propose that the seven markers could be used with marker-assisted selection to breed a new variety of common carp, and the six candidate genes could help in understanding the scale cover mechanism.

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