Chromosome-level genome assembly and annotation of the White-spotted spinefoot Siganus canaliculatus
文献类型： 外文期刊
作者： Huang, Xiaolin 1 ; Lu, Yanke 4 ; Zhang, Hui 4 ; Xian, Lin 1 ; Huang, Shiting 4 ; Yang, Yukai 1 ; Wang, Lei 4 ; Zhang, Dianchang 1 ; Li, Chao 4 ;
作者机构： 1.Chinese Acad Fishery Sci, South China Sea Fisheries Res Inst, Key Lab South China Sea Fishery Resources Exploita, Minist Agr & Rural Affairs, Guangzhou 510300, Peoples R China
2.Sanya Trop Fisheries Res Inst, Hainan Engn Res Ctr Deep Sea Aquaculture & Proc, Sanya 572018, Peoples R China
3.Chinese Acad Fishery Sci, Shenzhen Base South China Sea Fisheries Res Inst, Natl Fishery Resources & Environm Dapeng Observat, Shenzhen 518121, Peoples R China
4.South China Normal Univ, Guangdong Prov Engn Technol Res Ctr Environmentall, Sch Life Sci,Guangdong Prov Key Lab Hlth & Safe Aq, Guangzhou Key Lab Subtrop Biodivers & Biomonitorin, Guangzhou, Peoples R China
5.BGI Shenzhen, State Key Lab Agr Genom, Shenzhen 518083, Peoples R China
期刊名称：SCIENTIFIC DATA （ 影响因子：6.9； 五年影响因子：8.7 ）
ISSN：
年卷期： 2025 年 12 卷 1 期
页码：
收录情况： SCI
摘要： The White-spotted spinefoot S. canaliculatus, is an economically important marine fish in South China and featured by possessing poisonous glands in its fin spines. However, the unavailability of the S. canaliculatus genome has been a serious obstacle to genetic breeding as well as basic researches such as uncovering genomic basis underlying its toxigenic glands. Here, we presented a chromosome-level genome assembly coupled with good annotation of S. canaliculatus using multiple omics technologies. The assembled genome size was 547.39 Mb, with a contig N50 and scaffold N50 length of 21.41 Mb and 21.79 Mb, respectively. Approximately 95.32% (521.76 Mb) of assembled sequences were placed into 24 pseudochromosomes with the support of Hi-C contact map. Furthermore, around 16.37% of the genome was composed of repetitive elements. The quality of the assembly assessed using BUSCO showed that 98.6% of BUSCO genes were identified as complete. 25,323 protein-coding genes were predicted after integration of three kinds of evidence, of which 96.96% were functionally annotated in at least one of nine protein databases. In sum, the chromosome-level genome assembly and annotation provide fundamental resources for genetic breeding and molecular mechanism related studies of S. canaliculatus.
- 相关文献
作者其他论文 更多>>
-
Deciphering Trachinotus ovatus resistance to Streptococcus agalactiae:GWAS :GWAS identification of key SNPs and candidate genes
作者：Sun, Yi-Yao;Gao, Jie;Liu, Bao-Suo;Zhang, Nan;Guo, Hua-Yang;Zhu, Ke-Cheng;Xian, Lin;Zhang, Dian-Chang;Sun, Yi-Yao;Liu, Bao-Suo;Zhang, Nan;Guo, Hua-Yang;Zhu, Ke-Cheng;Xian, Lin;Zhang, Dian-Chang;Liu, Bao-Suo;Zhang, Nan;Zhu, Ke-Cheng;Zhang, Dian-Chang;Gao, Jie
关键词：GWAS; Trachinotus ovatus; Streptococcus agalactiae; SNP
-
Concentration-dependent effect of norfloxacin on iron toxicity in the intestine of large yellow croaker Larimichthys crocea (Richardson, 1846)
作者：Zeng, Lin;Wang, Yong-Hong;Ai, Chun-Xiang;Yu, Min-Hui;Liu, Bin;Liu, Bin;Zhang, Hui;Li, Fei
关键词：iron exposure; norfloxacin; NF-kappa B; HSP;
Larimichthys crocea -
Establishment and characterization of a cell line from Yunlong grouper (Epinephelus moara ♀ and Epinephelus lanceolatus ♂) larva and its response to infectious spleen and kidney necrosis virus infection
作者：Guo, Chenfei;Sha, Zhenxia;Guo, Chenfei;Gong, Zhihong;Fang, Fei;Zhang, Qi;Wang, Na;Su, Yuqin;Wang, Lei;Chen, Songlin;Chen, Songlin
关键词：Yunlong grouper; Larvae; Cell line; Iridovirus; Glar
-
Haplotype resolved chromosome-level genome assembly of the gold barb (Barbodes semifasciolatus)
作者：Chen, Weitao;Li, Yuefei;Li, Jie;Chen, Weitao;Li, Yuefei;Li, Jie;Chen, Weitao;Li, Yuefei;Li, Jie;Li, Chao;Yang, Rong;Wu, Baosheng
关键词：
-
Gut microbiome composition likely affects the growth of Trachinotus ovatus by influencing the host's metabolism
作者：Wu, Chen-Xu;Zhang, Dian-Chang;Wu, Chen-Xu;Liu, Bao-Suo;Guo, Hua-Yang;Zhu, Teng-Fei;Xian, Lin;Zhang, Nan;Zhu, Ke-Cheng;Zhang, Dian-Chang;Guo, Hua-Yang;Zhang, Nan;Zhu, Ke-Cheng;Zhang, Dian-Chang;Liu, Bao-Suo;Zhang, Nan;Zhu, Ke-Cheng;Zhang, Dian-Chang;Liu, Bao-Suo;Zhang, Dian-Chang
关键词：Trachinotus ovatus; Growth differences; Gut microbiota; Interspecies interactions
-
Identification and functional analysis of glutathione S-transferase gene family in Trachinotus ovatus: Transcriptomic response to environmental and pathogenic stress
作者：Zhou, Jia-Mei;Zhang, Tian-Yue;Zhou, Jia-Mei;Zhu, Teng-Fei;Guo, Hua-Yang;Xian, Lin;Liu, Bao-Suo;Zhang, Nan;Zhang, Tian-Yue;Zhu, Ke-Cheng;Zhang, Dian-Chang;Zhu, Teng-Fei;Guo, Hua-Yang;Xian, Lin;Zhang, Nan;Zhu, Ke-Cheng;Zhang, Dian-Chang;Liu, Bao-Suo;Zhang, Nan;Zhu, Ke-Cheng;Zhang, Dian-Chang;Liu, Bao-Suo
关键词：Glutathione S-transferase; Trachinotus ovatus; Hypoxia stress; Pathogenic stress
-
SNPs in the Galectin-8 gene of Acanthopagrus latus have been found to be associated with resistance trait to Streptococcus iniae
作者：Pan, Jin-Min;Guo, Hua-Yang;Liu, Bao-Suo;Zhang, Nan;Xian, Lin;Zhu, Teng-Fei;Zhu, Ke-Cheng;Zhang, Dian-Chang;Pan, Jin-Min;Guo, Hua-Yang;Liu, Bao-Suo;Zhang, Nan;Xian, Lin;Zhu, Teng-Fei;Zhu, Ke-Cheng;Zhang, Dian-Chang;Pan, Jin-Min;Guo, Hua-Yang;Liu, Bao-Suo;Zhang, Nan;Xian, Lin;Zhu, Teng-Fei;Zhu, Ke-Cheng;Zhang, Dian-Chang
关键词：Acanthopagrus latus; Streptococcus iniae; SNPs; Galectin-8
