Comprehensive molecular evolution and gene expression analyses of the ABC1 atypical kinase family in rice and Arabidopsis
文献类型： 外文期刊
作者： Gao, Qingsong 1 ; Zang, Hui 2 ; Gao, Yun 3 ; Yang, Zefeng 3 ; Zhou, Yong 3 ; Luo, Yuming 1 ; Yuan, Yuan 3 ; Wang, Yifan 3 ;
作者机构： 1.Huaiyin Normal Univ, Jiangsu Key Lab Ecoagr Biotechnol Hongze Lake, Huaian 223300, Peoples R China
2.Inst Agr Sci Coastal Area Jiangsu Prov, Yan Chen 224000, Peoples R China
3.Yangzhou Univ, Jiangsu Prov Key Lab Crop Genet & Physiol, Yangzhou 225009, Jiangsu, Peoples R China
4.Yangzhou Univ, Jiangsu Prov Key Lab Crop Gen
关键词： ABC1 gene;Atypical protein kinase;Molecular evolution;Gene expression;Coexpression analysis;Oryza sativa
期刊名称：JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY （ 影响因子：1.175； 五年影响因子：1.238 ）
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收录情况： SCI
摘要： The ABC1 atypical kinases (aPKs) have been extensively studied in bacteria, yeast and human, where their mutation causes a deficiency of ubiquinone, an isoprenoid compound in the respiratory electron transfer chain. Considerably less is known, however, about their evolution and function in higher plants. In this study, we identified 16 ABC1-domain containing genes from model plant rice by comprehensive genome analysis and gene cloning. Detection of positive selection showed that purifying selection was the major force underlying the evolution of most rice and Arabidopsis ABC1s. However, the expression profiles of plant ABC1s appear to have diverged based on microarray data analysis and realtime PCR; some of them are primarily expressed in developing leaves, some in stamens and/or mature pollen, whereas others in diverse tissues and organs. The possible functions of plant ABC1s were identified using genome-wide coexpression analysis. This analysis suggested that many of them might be involved in the regulation of isoprenoid biosynthesis. In conclusion, the plant ABC1 aPICs, which harbor distinct expression patterns, might have conserved functions in modulating isoprenoid metabolism.
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Wyse;Bouskila, Amos;Shacham, Boaz;Gossa, Tegenu;Ballerio, Alberto;Allievi, Alessandro;de Jager, Gerhard;Petroni, Giulio;Peruzzi, Lorenzo;D'Antraccoli, Marco;Serra, Valentina;Bisi, Alessandro;Chiarucci, Alessandro;Hilpold, Andreas;Rosso, Antonietta;Sciuto, Francesco;Mingozzi, Antonio;Giovanni, Boano;Massa, Bruno;Marrone, Federico;Vecchioni, Luca;Guarino, Riccardo;Giusto, Carlo;Lombardi, Chiara;Nepi, Chiara;Scaccini, Davide;Fontaneto, Diego;Banfi, Enrico;Rigato, Fabrizio;Galasso, Gabriele;Chiozzi, Giorgio;Gallo, Enrico;Bertasi, Fabio;Bartolucci, Fabrizio;Fabbriciani, Fabrizio;Andreone, Franco;Polgar, Gianluca;Filibeck, Goffredo;Tessa, Giulia;Gardini, Giulio;Fenu, Giuseppe;Mazzini, Ilaria;Langeneck, Joachim;Bartolozzi, Luca;Bologna, Marco A.;Abeli, Thomas;Dellacasa, Marco;Uliana, Marco;Novarini, Nicola;Faccoli, Massimo;Majorano, Paolo;Zilioli, Michele;Raia, Pasquale;Cerretti, Pierfilippo;Poggi, Roberto;Bertolino, Sandro;Orsenigo, Simone;Martellos, Stefano;Greuter, Werner;Greuter, Werner;Kouakou, Lombart Maurice;Kato, Daichi;Yadav, Harsh;Chiba, Hideyuki;Chiba, Hideyuki;Yoshitomi, Hiroyuki;Kakui, Keiichi;Kwak, Mackenzie L.;Dick, Matthew H.;Ikuno, Kenji;Genka, Masaaki;Yano, Okihito;Kakizoe, Showtaro;Hellemans, Simon;Jashenko, Roman;Dujsebayeva, Tatjana;Kabak, Ilya;Kabak, Ilya;Katumo, Daniel Mutavi;Baasanmunkh, Shukherdorj;Choi, Hyeok Jae;Shin, Jae-Seo;Eun, Lim Ji;Jung, Eui-Kwon;Kim, Young-Dong;Lazkov, Georgii;Strijk, Joeri Sergej;Shavrin, Alexey;Greke, Kristine;Kalnins, Martins;Petrasiunas, Andrius;Uogintas, Domas;Stonis, Jonas R.;Gudzinskas, Zigmantas;Sokolova, Elena;Kharchenko, Viktoria;Andriambololonera, Sylvie;Kumaran, Jayaraj Vijaya;Appalasamy, Suganthi;Prozorov, Alexey M.;Dembele, Jacques;Hanan Alipi, Ana Maria;Solano Gomez, Aniceto Rodolfo;Maruri-Aguilar, Beatriz;Ramirez Diaz, Claudia Janeth;Carnevali Fernandez-Concha, German;Ramirez-Morillo, Ivon M.;Stefano Duno, Rodrigo;Delgadillo-Moya, Claudio;Prieto Torres, David Alexander;Daniel Tejero-Diez, J.;Meave, Jorge A.;Alvarado Cardenas, Leonardo Osvaldo;Terrazas, Teresa;Barradas, Victor L.;Adilson Pinedo-Escatel, J.;Murugan, Gopal;Ruiz Sanchez, Eduardo;Sanchez Martinez, Emiliano;Hernandez Martinez, Maria Magdalena;Gomez-Noguez, Felipe;Montiel Canales, Gustavo;Socorro Gonzalez-Elizondo, M.;Gonzalez Elizondo, Martha;Rolando Bastida-Zavala, J.;del Socorro Garcia-Madrigal, Maria;Alvarado Rodriguez, Jose Fernando;Lopez Mata, Lauro;Gonzalez Ledesma, Manuel;Ramirez-Marcial, Neptali;Cuevas Guzman, Ramon;Martinez-Camilo, Rub'n;Adilson Pinedo-Escatel, J.;Boldgiv, Bazartseren;Mathieu, Chambouleyron;Lermmel, Claude;Leger, Jean-Francois;Farooq, Harith;Irish, John;Shrestha, Krishna;Dop, A. J.;van der Geer, Alexandra;Jaramillo, Angelica Cibrian;Gielis, Cornelis (Cees);Simons, Erik;Sangster, George;Kronenberg, Gijs C.;Henrot, Jacqueline;Arntzen, Jan W.;Monsch, Kenneth A.;Duistermaat, Leni;Schilthuizen, Menno;d'Oliveira, Micha C.;van Eck, Andre P. W.;Egberts, E.;Peeters, Edwin;Sival, Francisca;Kessels, Han;Rutjes, Hendrikus Antonius;van Dam, Herman;Huang, Huasheng;van Eck, Iris;Klinge, Marcel;Graveland, Jaap;van der Vleuten, Jan;van Zuijlen, Jan Willem;Stroom, Jasper;Collombon, Miriam;van Valkenburg, Johan;Melis, John;Bruins, Linda;Knapp, Markus;Soesbergen, Martin;Beuk, Paul L. 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Luisa;Sanz Arnal, Maria;Miguez Rios, Monica;Sanchez Villegas, Rogelio;Alvarez, Elena;Fabado Alos, Javier;Baixeras, Joaquin;Gabriel Segarra-Moragues, Jose;Lucas Lledo, Jose Ignacio;Perez Santa-Rita, Jose Vicente;Monros, Juan S.;Monros Gonzalez, Juan S.;Angel Gomez-Serrano, Miguel;Lopez-Lopez, Pascual;Garilleti, Ricardo;Laguna, Emilio;Penalver Molla, Enrique;Jose Carreras, Esther San;Sanchez Frances, Raul;Gomez Valle, Silvia;Javier Jimenez-Lopez, F.;Fernandez-Gonzalez, Federico;Luis Yela, Jose;Torres Gonzalez, Felix;Garcia Martin, Joaquina Maria;Montserrat Martinez-Ortega, M.;Andres Sanchez, Santiago;Ojeda, Fernando;Blanco Pastor, Jose Luis;Rodriguez-Iglesias, Manuel A.;Ochoa-Hueso, Raol;Cabezas, Francisco J.;Galan-Diaz, Javier;Munoz-Rodriguez, Pablo;Canto, Paloma;Medina, Rafael;Gavilan, Rosario G.;Magana Ugarte, Rosina;Romero, Sara;Rico, Victor J.;Vazquez, Francisco M.;Mercadal i Corominas, Gabriel;Martinez-Sagarra, Gloria;Antonio Devesa, Juan;de la Estrella, Manuel;Romera, Graciela Gil;Ibarra, Pablo Tejero;Gonzalez-Samperiz, Pen'lope;Lazagabaster, Ignacio A.;Salcedo, Isabel;Etayo, Javier;Denzer, Wolfgang;Lopez-Pujol, Jordi;Garnatje, Teresa;Carlos Miranda, Jose;Rubiales, Juan M.;Martinez Labarga, Juan M.;Capo, Miquel;Andres Ros, Jose Vicente;Carretero Diaz, Jose-Miguel;Padulles Cubino, Josep;Borras, Joshua;Carlos Gutierrez-Marco, Juan;Mota, Juan F.;Pino Perez, Juan Jose;Saez, Llorenc;Serra Laliga, Lluis;Serra Laliga, Lluis;Lopez Merino, Lourdes;Buide del Real, M. Luisa;Vicens Fornes, Magdalena;Sanchez-Angulo, Manuel;Escudero, Marcial;Alcolea, Marta;Sanchez Gomez, Pedro;Fraga i Arguimbau, Pere;Orihuela-Rivero, Raol;Granjel, Rodrigo R.;Molino, Sonia;Garcia Mendizabal, Yoana;Carlsson, Bengt;Svensson, Brita;Bosagna, Carlos Guerrero;Arnqvist, Goran;Cardenas, Paco;Ahlberg, Per;Alstrom, Per;Liu, Zongzhuang;Alonso, German Hernandez;Wahlsteen, Eric;Bisang, Irene;Jonsson, Knud Andreas;Hedenas, Lars;Wedin, Mats;Noren, Michael;Stohr, Sabine;Kiel, Steffen;Rota, Jadranka;Wahlberg, Niklas;Tyler, Torbjorn;Arup, Ulf;Strid, Arne;Liljeblad, Johan;Lundin, Kennet;Nielsen, Peter;Strid, Arne;Alonso, German Hernandez;Chautems, Alain;Charpin, Andre;Mombrial, Florian;Zamora, Juan Carlos;Fumeaux, Nicolas;Clerc, Philippe;Garcia-Martin, Ana B.;Mueller, Andreas;Freitag, Anne;Landry, Bernard;Cuccodoro, Giulio;Sabatinelli, Guido;Lobl, Ivan;Valtotton, Laurent;Ruedi, Manuel;Schuchert, Peter;Praz, Christophe;Thivaiou, Danae;Klopfstein, Seraina;Cherix, Daniel;Mitchell, Edward;Mariaux, Jean;Haenni, Jean-Paul;Theurillat, Jean-Paul;Theurillat, Jean-Paul;Bernasconi, Marvco V.;Hawlitschek, Oliver;Samathi, Adun;Hyde, Kevin;Radji, Raoufou;Morales, J. Francisco;Charfi, Faouzia;El Mokni, Ridha;Gunay, Filiz;Agayeva, Saida;Giusti, Alessandro;Schuiteman, Andr';Goyder, David;Noltie, Henry J.;Larridon, Isabel;Bateman, Richard M.;Whittington, Andrew E.;Stewart, Nick;Leftwich, Ashley;Williams, Christopher David;Little, Crispin;Sherwood, Danniella;Lees, David C.;John, David Michael;Noltie, Henry J.;McLean, Ian F. G.;Badmin, John;Todd, Jonathan A.;Barclay, Maxwell V. 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V., Jr.;Esselstyn, Jacob;Eberhard, Jessica;Harms, Kyle E.;Johnson, Andrew;Capparella, Angelo;Rossi, Anthony;Casamatta, Dale;Namayandeh, Armin;Borkent, Art;Smith, Brian Tilston;Engel, Michael S.;Hellenthal, Barbara;Ratcliffe, Brett C.;O'Shea, Brian J.;Schmitt, C. Jonathan;Boufford, David;Morris, Paul J.;Shakya, Subir;Swift, Camm C.;McLeod, Samuel A.;Cohen, Chris M.;Borkent, Christopher J.;Borkent, Christopher J.;Rogers, D. Christopher;Gonzalez, Victor H.;Koenemann, Daniel;Campbell, David;Krause, David W.;Cushing, Paula;Sikes, Derek;Les, Don;DeKeyser, Edward S.;Cruz-Rivera, Edwin;Carter, Emily;Seeholzer, Glenn Fairbanks;Pratt, H. Douglas;Gerwin, John A.;Kaiser, Hinrich;Machio, Irene Villa;Harber, Julian;Zander, Richard H.;Gereau, Roy E.;Applequist, Wendy;Egger, J. Mark;Sagebiel, James Christopher;Lopez-Ribot, Jose L.;Atkinson, Thomas H.;Liebherr, James;Dombroskie, Jason J.;Hoghe, James N.;Wolfe, Jared;McGuire, Jimmy A.;Will, Kipling;Zuparko, Robert L.;Hansen, Robert W.;Brett, Roberta;Leal, Jose H.;Winston, Judith E.;Wen, Jun;Pinheiro, Paulo Duraes Pereira;Lee, Justin L.;Rabeler, Richard;Pargeter, Justin;Gregg, Katharine;Carpenter, Kenneth;McCracken, Kevin;Williams, Kevin;Korneyev, Severyn;Winker, Kevin;Austin, Kyhl A.;Watling, Les;Watson, Linda;Marin, Manuel;Epstein, Marc Edward;Key, Marcus M., Jr.;Marques, Mariana P.;Pyron, Mark;Dovciak, Martin;Hauser, Martin;Sage, Obediah;Garrison, Rosser W.;Winterton, Shaun L.;Gaimari, Stephen D.;West-Eberhard, Mary Jane;Diazgranados, Mauricio;Warren, Mel;Oliver, Michael K.;Ferro, Michael L.;Williams, Kevin;Evenhuis, Neal L.;Snow, Neil;Mizumoto, Nobuaki;Rakes, Patrick;Rohner, Patrick;Rozo-Lopez, Paula;Kerr, Peter H.;Stevens, Peter;Uetz, Peter;Wheeler, Quentin;DeWalt, R. Edward;McClelland, R. Kevan Schoonover;Hellenthal, Ronald;Meier, Rose;Heads, Sam W.;James, Samuel Wooster;Hilty, Steve;Adams, Susan B.;Letcher, Susan G.;Wood, Timothy S.;Walsh, S. J.;Murphy, William L.;Thomas, William Wayt;Khalimov, F. Z.;Rakhimov, Mukhammadtuychi;Abdullajonovich, Shodmonov Feruz;Tashpulatov, Yigitali;Rojas-Runjaic, Fernando J. M.;Cerda Perez, Hugo Gullermo;Torrecilla, Pedro;Zapata, Thirza Ruiz;Hoa, Hoang Quynh;Nguyen, Ngoc;Sharp, Cathy;Fitzpatrick, Moira
关键词：
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Long-term rice cultivation enhances root development and yields by improving the structural properties of soil aggregates in saline-alkaline environments
作者：Zhang, Bangyan;Zhang, Zhaohui;Xu, Xing;Bai, Xiaolong;Wu, Jinmin;Liu, Yunpeng;Wang, Bin;Li, Lei
关键词：Saline-alkaline soil; Rice cultivation; Soil aggregate stability; Particle size distribution; Root system characteristic; Crop yield
