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Comprehensive molecular evolution and gene expression analyses of the ABC1 atypical kinase family in rice and Arabidopsis

文献类型： 外文期刊

作者： Gao, Qingsong 1 ; Zang, Hui 2 ; Gao, Yun 3 ; Yang, Zefeng 3 ; Zhou, Yong 3 ; Luo, Yuming 1 ; Yuan, Yuan 3 ; Wang, Yifan 3 ;

作者机构： 1.Huaiyin Normal Univ, Jiangsu Key Lab Ecoagr Biotechnol Hongze Lake, Huaian 223300, Peoples R China

2.Inst Agr Sci Coastal Area Jiangsu Prov, Yan Chen 224000, Peoples R China

3.Yangzhou Univ, Jiangsu Prov Key Lab Crop Genet & Physiol, Yangzhou 225009, Jiangsu, Peoples R China

4.Yangzhou Univ, Jiangsu Prov Key Lab Crop Gen

关键词： ABC1 gene;Atypical protein kinase;Molecular evolution;Gene expression;Coexpression analysis;Oryza sativa

期刊名称：JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY （ 影响因子：1.175； 五年影响因子：1.238 ）

ISSN：

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收录情况： SCI

摘要： The ABC1 atypical kinases (aPKs) have been extensively studied in bacteria, yeast and human, where their mutation causes a deficiency of ubiquinone, an isoprenoid compound in the respiratory electron transfer chain. Considerably less is known, however, about their evolution and function in higher plants. In this study, we identified 16 ABC1-domain containing genes from model plant rice by comprehensive genome analysis and gene cloning. Detection of positive selection showed that purifying selection was the major force underlying the evolution of most rice and Arabidopsis ABC1s. However, the expression profiles of plant ABC1s appear to have diverged based on microarray data analysis and realtime PCR; some of them are primarily expressed in developing leaves, some in stamens and/or mature pollen, whereas others in diverse tissues and organs. The possible functions of plant ABC1s were identified using genome-wide coexpression analysis. This analysis suggested that many of them might be involved in the regulation of isoprenoid biosynthesis. In conclusion, the plant ABC1 aPICs, which harbor distinct expression patterns, might have conserved functions in modulating isoprenoid metabolism.

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