Complete mitochondrial genome of Cuora trifasciata (Chinese three-striped box turtle), and a comparative analysis with other box turtles
文献类型: 外文期刊
作者: Li, Wei 1 ; Zhang, Xin-Cheng 1 ; Zhao, Jian 1 ; Shi, Yan 1 ; Zhu, Xin-Ping 1 ;
作者机构: 1.Chinese Acad Fishery Sci, Key Lab Trop & Subtrop Fishery Resource Applicat, Minist Agr, Pearl River Fisheries Res Inst, Guangzhou 510380, Guangdong, Peoples R China
2.Shanghai Ocean Univ, Coll Life Sci & Fisheries, Shanghai 201306, Peoples R China
关键词: Mitochondrial genome;Cuora trifasciata;Genus Cuora;Comparative mitogenomic analysis;Phylogenetic analysis
期刊名称:GENE ( 影响因子:3.688; 五年影响因子:3.329 )
ISSN:
年卷期:
页码:
收录情况: SCI
摘要: Cuora trifasciata has become one of the most critically endangered species in the world. The complete mitochondrial genome of C trifasciata (Chinese three-striped box turtle) was determined in this study. Its mitochondrial genome is a 16,575-bp-long circular molecule that consists of 37 genes that are typically found in other vertebrates. And the basic characteristics of the C trifasciata mitochondrial genome were also determined. Moreover, a comparison of C trifasciata with Cuora cyclornata, Cuora pani and Cuora aurocapitata indicated that the four mitogenomics differed in length, codons, overlaps, 13 protein-coding genes (PCGs), ND3, rRNA genes, control region, and other aspects. Phylogenetic analysis with Bayesian inference and maximum likelihood based on 12 protein-coding genes of the genus Cuora indicated the phylogenetic position of C trifasciata within Cuora. The phylogenetic analysis also showed that C trifasciata from Vietnam and China formed separate monophyletic clades with different Cuora species. The results of nucleotide base compositions, protein-coding genes and phylogenetic analysis showed that C trifasciata from these two countries may represent different Cuora species. (C) 2014 Elsevier B.V. All rights reserved.
- 相关文献
作者其他论文 更多>>
-
Molecular Cloning and Characterization of Scavenger Receptor Class B Type 1 in Grass Carp (Ctenopharyngodon idellus) and Its Expression Profile following Grass Carp Reovirus Challenge
作者:Zhang, Yang;Shi, Jiayuan;Lu, Yuntao;Luo, Qing;Chen, Kunci;Zhao, Jian;Ou, Mi;Zhang, Yang;Lu, Yuntao;Ou, Mi;Shi, Jiayuan;Chu, Pengfei;Ou, Mi;Huang, Rong;Wang, Yaping
关键词:grass carp; GCRV; SRB1; gene expression; age-dependent susceptibility
-
Molecular Characterization, Expression Pattern, DNA Methylation and Gene Disruption of Figla in Blotched Snakehead (Channa maculata)
作者:Zhang, Yang;Lu, Yuntao;Cui, Xiaojuan;Sun, Yuandong;Ou, Mi;Zhang, Yang;Lu, Yuntao;Zhang, Xiaotian;Wu, Yuxia;Zhao, Jian;Luo, Qing;Liu, Haiyang;Chen, Kunci;Fei, Shuzhan;Ou, Mi;Xu, Feng
关键词:Figla; ovarian development; gene expression; epigenetic regulation; CRISPR/Cas9 system
-
A genome-wide association study to identify growth-related SNPs and genes in blotched snakehead (Channa maculata)
作者:Liu, Haiyang;Xia, Weiwei;Ou, Mi;Luo, Qing;Zhang, Xincheng;Fei, Shuzhan;Huang, Sujing;Zhao, Xunjin;Zhang, Jin;Cui, Tongxin;Chen, Kunci;Zhao, Jian;Xia, Weiwei;Huang, Sujing;Chen, Kunci;Zhao, Jian;Xiong, Bingyuan;Wu, Guohong
关键词:Channa maculata; Growth trait; Genome resequencing; SNP; GWAS; Candidate genes
-
Transcriptomics and metabolomics reveal the regulation of reproductive performance and egg quality of blotched snakehead Channa maculata broodstock induced by a high protein diet
作者:Fei, Shuzhan;Ou, Mi;Liu, Haiyang;Zhang, Xincheng;Luo, Qing;Li, Kaibin;Chen, Kunci;Zhao, Jian;Chen, Baixiang
关键词:Blotched snakehead; Dietary protein; Egg quality; Sex steroid hormone; Reproductive performance
-
Assessing and Screening of Female Fertility in Artificially Bred Asian Yellow Pond Turtles (Mauremys mutica) Based on Parentage Assignment
作者:Zhang, Xincheng;Zhao, Jian;Zhou, Chenyao;Li, Wei;Liu, Yihui;Wei, Chengqing;Wang, Yakun;Hong, Xiaoyou;Zhu, Xinping;Liu, Xiaoli;Zhou, Chenyao
关键词:female fecundity; Mauremys mutica; microsatellite; breeder contributions; genetic variability
-
Effects of essential amino acids supplementation in a low-protein diet on growth performance, intestinal health and microbiota of juvenile blotched snakehead ( Channa maculata )
作者:Fei, Shuzhan;Kang, Jiamin;Ou, Mi;Liu, Haiyang;Zhang, Xincheng;Luo, Qing;Li, Kaibin;Chen, Kunci;Zhao, Jian;Kang, Jiamin
关键词:Low protein; Essential amino acids; Antioxidant; Microbiome; Blotched snakehead
-
Establishment and characterization of a kidney cell line from hybrid snakehead (male Channa argus x female Channa maculata ) and its susceptibility to hybrid snakehead rhabdovirus (HSHRV)
作者:Deng, Huiling;Zheng, Shucheng;Li, Yingying;Mo, Xubing;Zhao, Jian;Yin, Jiyuan;Shi, Cunbin;Wang, Qing;Wang, Yingying;Deng, Huiling;Zheng, Shucheng;Wang, Qing;Wang, Yingying
关键词:CAMK cell line; Hybrid snakehead; Virology; Hybrid snakehead rhabdovirus