Complete mitochondrial genome of Cuora trifasciata (Chinese three-striped box turtle), and a comparative analysis with other box turtles
文献类型: 外文期刊
作者: Li, Wei 1 ; Zhang, Xin-Cheng 1 ; Zhao, Jian 1 ; Shi, Yan 1 ; Zhu, Xin-Ping 1 ;
作者机构: 1.Chinese Acad Fishery Sci, Key Lab Trop & Subtrop Fishery Resource Applicat, Minist Agr, Pearl River Fisheries Res Inst, Guangzhou 510380, Guangdong, Peoples R China
2.Shanghai Ocean Univ, Coll Life Sci & Fisheries, Shanghai 201306, Peoples R China
关键词: Mitochondrial genome;Cuora trifasciata;Genus Cuora;Comparative mitogenomic analysis;Phylogenetic analysis
期刊名称:GENE ( 影响因子:3.688; 五年影响因子:3.329 )
ISSN:
年卷期:
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收录情况: SCI
摘要: Cuora trifasciata has become one of the most critically endangered species in the world. The complete mitochondrial genome of C trifasciata (Chinese three-striped box turtle) was determined in this study. Its mitochondrial genome is a 16,575-bp-long circular molecule that consists of 37 genes that are typically found in other vertebrates. And the basic characteristics of the C trifasciata mitochondrial genome were also determined. Moreover, a comparison of C trifasciata with Cuora cyclornata, Cuora pani and Cuora aurocapitata indicated that the four mitogenomics differed in length, codons, overlaps, 13 protein-coding genes (PCGs), ND3, rRNA genes, control region, and other aspects. Phylogenetic analysis with Bayesian inference and maximum likelihood based on 12 protein-coding genes of the genus Cuora indicated the phylogenetic position of C trifasciata within Cuora. The phylogenetic analysis also showed that C trifasciata from Vietnam and China formed separate monophyletic clades with different Cuora species. The results of nucleotide base compositions, protein-coding genes and phylogenetic analysis showed that C trifasciata from these two countries may represent different Cuora species. (C) 2014 Elsevier B.V. All rights reserved.
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