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Characterization of the mitochondrial genome of the Malabar trevally Carangoides malabaricus and related phylogenetic analyses

文献类型： 外文期刊

作者： Li, Min 1 ; Huang, Zirong 1 ; Chen, Zuozhi 1 ;

作者机构： 1.Chinese Acad Fishery Sci, South China Sea Fisheries Res Inst, Guangzhou, Guangdong, Peoples R China

2.Minist Agr, Sci Observing & Expt Stn, South China Sea Fishery Resources & Environm, Guangzhou, Guangdong, Peoples R China

关键词： Carangoides malabaricus;Carangidae;mitochondrial genome

期刊名称：MITOCHONDRIAL DNA PART A （ 影响因子：1.514； 五年影响因子：0.707 ）

ISSN：

年卷期：

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收录情况： SCI

摘要： The Malabar trevally Carangoides malabaricus is a widely distributed inshore fish species and commercially important in some tropical regions. This study presented the complete mitochondrial genome of C. malabaricus as well as its phylogenetic position in Carangidae. The entire sequence was 16,561 bp in length, including the typical structure of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, 1 control regions and 1 L-strand replication origin. The arrangement of the genes was in line with other teleosts. The genome was composed of 29.6% C, 27.8% A, 26.2% T and 16.4% G, showing an obvious anti G bias. Phylogenetic analyses using the concatenated sequence of the protein-coding genes showed similar results in the Neighbour-Joining and Bayesian inference trees. Three clades were formed as Subfamilies Caranginae, Seriolinae and Trachinotinae in Carangidae based on the current dataset. C. malabaricus was most closely related to the species in the same genus.

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[1]Mitochondrial genome of the Torpedo scad Megalaspis cordyla (Perciformes: Carangidae): genome characterization and phylogenetic consideration. Li, Min,Li, Yufang,Chen, Zuozhi,Li, Min,Li, Yufang. 2016

[2]Organization and characterization of the mitochondrial genome of the Razorbelly scad Alepes kleinii (Perciformes: Carangidae). Li, Min,Zou, Keshu,Li, Min,Zou, Keshu. 2016

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[7]Characterization of the mitochondrial genome of the Shortfin scad Decapterus macrosoma (Perciformes: Carangidae). Li, Min,Zhang, Peng,Sun, Dianrong,Chen, Tao,Fan, Jiangtao,Zou, Keshu,Chen, Zuozhi,Li, Min,Zou, Keshu.

[8]Description of the mitochondrial genome of yellowtail scad Atule mate (Perciformes: Carangidae). Li, Min,Li, Yufang,Chen, Zuozhi,Li, Min,Li, Yufang,Chen, Zuozhi. 2016

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