中国水产科学研究院机构知识库

SNP discovery and Characterization from transcriptomes of Asian yellow pond turtle, Mauremys mutica

收藏
分享
全文链接

文献类型：外文期刊

作者： Zhao, Jian ¹ ; Zhang, Xincheng ¹ ; Li, Wei ¹ ; Chen, Kunci ¹ ; Zhang, Dandan ¹ ; Zhu, Xinping ¹ ;

作者机构： 1.Chinese Acad Fishery Sci, Pearl River Fisheries Res Inst, Key Lab Trop & Subtrop Fishery Resource Applicat, Minist Agr, Guangzhou 510380, Guangdong, Peoples R China

2.Nanjing Agr Univ, Wuxi Fishe

关键词： Mauremys mutica;Asian yellow pond turtle;SNP;Transcriptome

期刊名称：CONSERVATION GENETICS RESOURCES （影响因子：0.973；五年影响因子：0.946 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Asian yellow pond turtle (Mauremys mutica) is an endangered species, being listed in the IUCN red list of threatened species. In China, most living resources are kept in turtle farms. Insufficient molecular markers have hindered the effective management and artificial breeding programs of this important species. In this study, we discovered and validated 43 novel polymorphic bi-allelic SNP markers for M. mutica from the transcriptome of brain and gonad tissue. The observed and expected heterozygosity ranged from 0.0303 to 0.5758 and 0.0303-0.5072, respectively. These markers would be used in genetic studies helping conservation and management of M. mutica.

相关文献

[1]Molecular Characterization and Expression Analysis of Matrix Metalloproteinase 3 in the Asian Yellow Pond Turtle Mauremys mutica. Zhao, Mi,Shi, Yan,Zhao, Jian,Zhu, Xinping,Chen, Kunci,Pan, Debo,Wet, Chengqing. 2014

[2]Molecular Characterization and Expression Analysis of VSIG4 from the Asian Yellow Pond Turtle, Mauremys mutica. Zhao, Mi,Shi, Yan,Zhu, Xinping,Chen, Kunci,Pan, Debo,Wei, Chengqing. 2012

[3]Characterization of 19 polymorphic microsatellite markers for Asian yellow pond turtle (Mauremys mutica). Zhao, Jian,Wen, Ping,Li, Wei,Zhang, Dandan,Zhu, Xinping,Zhao, Jian,Wen, Ping.

[4]Characterization of the bay scallop (Argopecten irradians concentricus Say) transcriptome and identification of growth-related genes. Fan, Sigang,Guo, Yihui,Liu, Baosuo,Fan, Sigang,Guo, Yihui,Liu, Baosuo,Yu, Dahui,Zhang, Dongling.

[5]Genetic diversity and relationship of Mauremys mutica and M-annamensis assessed by DNA barcoding sequences. Zhao, Jian,Li, Wei,Wen, Ping,Zhang, Dandan,Zhu, Xinping,Zhao, Jian,Wen, Ping. 2016

[6]Effects of incubation temperatures on embryonic development in the Asian yellow pond turtle. Zhu, Xin-Ping,Wei, Chen-Qing,Zhao, Wei-Hua,Du, He-Jun,Chen, Yong-Le,Gui, Jian-Fang. 2006

[7]The mitochondrial genomes of three lineages of Asian yellow pond turtle, Mauremys mutica. Zhao, Jian,Li, Wei,Zhang, Dandan,Wen, Ping,Zhu, Xinping,Zhao, Jian,Wen, Ping.

[8]建鲤IGFBP1基因的克隆及与增重相关的SNP位点分析. 魏可鹏,俞菊华,李红霞,李建林,唐永凯,夏正龙. 2012

[9]长牡蛎酪氨酸酶基因(CgTyr1)SNP多态性与壳色性状的关联. 赵博文,李琪,王九龙,于红. 2020

[10]大口黑鲈PACAP基因SNPs的筛选及其与生长性状的关联分析. 刘浩,白俊杰,李胜杰,马冬梅,全迎春. 2016

[11]大口黑鲈EST-SNP标记开发及其与生长性状的相关性分析. 李胜杰,白俊杰,赵荦,朱冰,朱新平. 2018

[12]利用SSR、EST-SSR、SNP标记对鲤食物转化率、体厚、体质量3种性状的分析. 王宣朋,张晓峰,李文升,张天奇,孙效文. 2011

[13]草鱼载脂蛋白A-Ⅰ-1基因3'非编码区SNPs筛选及其与生长性状的关联分析. 刘小献,白俊杰,于凌云,李胜杰. 2012

[14]尼罗罗非鱼MYF6基因SNP位点筛选及其与生长性状的关联分析. 高风英,佟延南,刘志刚,曹建萌,王淼,衣萌萌,可小丽,卢迈新,朱海. 2024

[15]鲤鱼基因组同源框Hoxa3a序列同源性分析与分子进化研究. 耿波,关云涛,孙效文,匡友谊. 2011

[16]中国明对虾抗菌肽基因应答WSSV侵染的表达及其SNP分析. 高焕,赖晓芳,孟宪红,罗坤,孔杰. 2011

[17]凡纳滨对虾易位子相关蛋白α亚基(TRAPα)基因解析及其与WSSV抗性的关联. 王晶晶,李旭鹏,薛倩,曹宝祥,栾生,罗坤,隋娟,代平,曹家旺,谭建,陈宝龙,傅强,孔杰,高焕,孟宪红. 2024

[18]中华鳖GHRL基因SNPs的筛选及生长性状的关联分析. 李纯,陈辰,赵建,洪孝友,李伟,朱新平. 2018

[19]TLR9基因SNP位点检测及其在7种鲤中的遗传多样性研究. 柏盈盈,贾智英,葛会争,李池陶,张秋军,石连玉. 2013

[20]草鱼PKMa基因SNPs筛选及与耐糖性状的关联分析. 樊佳佳,唐小红,白俊杰,姜鹏,马冬梅,李胜杰. 2019

作者其他论文更多>>

Molecular Cloning and Characterization of Scavenger Receptor Class B Type 1 in Grass Carp (Ctenopharyngodon idellus) and Its Expression Profile following Grass Carp Reovirus Challenge

作者：Zhang, Yang;Shi, Jiayuan;Lu, Yuntao;Luo, Qing;Chen, Kunci;Zhao, Jian;Ou, Mi;Zhang, Yang;Lu, Yuntao;Ou, Mi;Shi, Jiayuan;Chu, Pengfei;Ou, Mi;Huang, Rong;Wang, Yaping

关键词：grass carp; GCRV; SRB1; gene expression; age-dependent susceptibility
Molecular Characterization, Expression Pattern, DNA Methylation and Gene Disruption of Figla in Blotched Snakehead (Channa maculata)

作者：Zhang, Yang;Lu, Yuntao;Cui, Xiaojuan;Sun, Yuandong;Ou, Mi;Zhang, Yang;Lu, Yuntao;Zhang, Xiaotian;Wu, Yuxia;Zhao, Jian;Luo, Qing;Liu, Haiyang;Chen, Kunci;Fei, Shuzhan;Ou, Mi;Xu, Feng

关键词：Figla; ovarian development; gene expression; epigenetic regulation; CRISPR/Cas9 system
A genome-wide association study to identify growth-related SNPs and genes in blotched snakehead (Channa maculata)

作者：Liu, Haiyang;Xia, Weiwei;Ou, Mi;Luo, Qing;Zhang, Xincheng;Fei, Shuzhan;Huang, Sujing;Zhao, Xunjin;Zhang, Jin;Cui, Tongxin;Chen, Kunci;Zhao, Jian;Xia, Weiwei;Huang, Sujing;Chen, Kunci;Zhao, Jian;Xiong, Bingyuan;Wu, Guohong

关键词：Channa maculata; Growth trait; Genome resequencing; SNP; GWAS; Candidate genes
Transcriptomics and metabolomics reveal the regulation of reproductive performance and egg quality of blotched snakehead Channa maculata broodstock induced by a high protein diet

作者：Fei, Shuzhan;Ou, Mi;Liu, Haiyang;Zhang, Xincheng;Luo, Qing;Li, Kaibin;Chen, Kunci;Zhao, Jian;Chen, Baixiang

关键词：Blotched snakehead; Dietary protein; Egg quality; Sex steroid hormone; Reproductive performance
Assessing and Screening of Female Fertility in Artificially Bred Asian Yellow Pond Turtles (Mauremys mutica) Based on Parentage Assignment

作者：Zhang, Xincheng;Zhao, Jian;Zhou, Chenyao;Li, Wei;Liu, Yihui;Wei, Chengqing;Wang, Yakun;Hong, Xiaoyou;Zhu, Xinping;Liu, Xiaoli;Zhou, Chenyao

关键词：female fecundity; Mauremys mutica; microsatellite; breeder contributions; genetic variability
Effects of essential amino acids supplementation in a low-protein diet on growth performance, intestinal health and microbiota of juvenile blotched snakehead ( Channa maculata )

作者：Fei, Shuzhan;Kang, Jiamin;Ou, Mi;Liu, Haiyang;Zhang, Xincheng;Luo, Qing;Li, Kaibin;Chen, Kunci;Zhao, Jian;Kang, Jiamin

关键词：Low protein; Essential amino acids; Antioxidant; Microbiome; Blotched snakehead
Establishment and characterization of a kidney cell line from hybrid snakehead (male Channa argus x female Channa maculata ) and its susceptibility to hybrid snakehead rhabdovirus (HSHRV)

作者：Deng, Huiling;Zheng, Shucheng;Li, Yingying;Mo, Xubing;Zhao, Jian;Yin, Jiyuan;Shi, Cunbin;Wang, Qing;Wang, Yingying;Deng, Huiling;Zheng, Shucheng;Wang, Qing;Wang, Yingying

关键词：CAMK cell line; Hybrid snakehead; Virology; Hybrid snakehead rhabdovirus

SNP discovery and Characterization from transcriptomes of Asian yellow pond turtle, Mauremys mutica

作者其他论文更多>>

Molecular Cloning and Characterization of Scavenger Receptor Class B Type 1 in Grass Carp (Ctenopharyngodon idellus) and Its Expression Profile following Grass Carp Reovirus Challenge

Molecular Characterization, Expression Pattern, DNA Methylation and Gene Disruption of Figla in Blotched Snakehead (Channa maculata)

A genome-wide association study to identify growth-related SNPs and genes in blotched snakehead (Channa maculata)

Transcriptomics and metabolomics reveal the regulation of reproductive performance and egg quality of blotched snakehead Channa maculata broodstock induced by a high protein diet

Assessing and Screening of Female Fertility in Artificially Bred Asian Yellow Pond Turtles (Mauremys mutica) Based on Parentage Assignment

Effects of essential amino acids supplementation in a low-protein diet on growth performance, intestinal health and microbiota of juvenile blotched snakehead ( Channa maculata )

Establishment and characterization of a kidney cell line from hybrid snakehead (male Channa argus x female Channa maculata ) and its susceptibility to hybrid snakehead rhabdovirus (HSHRV)

意见箱

SNP discovery and Characterization from transcriptomes of Asian yellow pond turtle, Mauremys mutica

作者其他论文 更多>>

Molecular Cloning and Characterization of Scavenger Receptor Class B Type 1 in Grass Carp (Ctenopharyngodon idellus) and Its Expression Profile following Grass Carp Reovirus Challenge

Molecular Characterization, Expression Pattern, DNA Methylation and Gene Disruption of Figla in Blotched Snakehead (Channa maculata)

A genome-wide association study to identify growth-related SNPs and genes in blotched snakehead (Channa maculata)

Transcriptomics and metabolomics reveal the regulation of reproductive performance and egg quality of blotched snakehead Channa maculata broodstock induced by a high protein diet

Assessing and Screening of Female Fertility in Artificially Bred Asian Yellow Pond Turtles (Mauremys mutica) Based on Parentage Assignment

Effects of essential amino acids supplementation in a low-protein diet on growth performance, intestinal health and microbiota of juvenile blotched snakehead ( Channa maculata )

Establishment and characterization of a kidney cell line from hybrid snakehead (male Channa argus x female Channa maculata ) and its susceptibility to hybrid snakehead rhabdovirus (HSHRV)

意 见 箱

作者其他论文更多>>

意见箱