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Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa

文献类型： 外文期刊

作者： Zhuang, Jing 1 ; Cai, Bin 1 ; Peng, Ri-He 1 ; Zhu, Bo 1 ; Jin, Xiao-Feng 1 ; Xue, Yong 1 ; Gao, Feng 1 ; Fu, Xiao-Yan 1 ; Ti 1 ;

作者机构： 1.Shanghai Acad Agr Sci, Shanghai 201106, Peoples R China

2.Nanjing Agr Univ, Nanjing 210095, Peoples R China

关键词： Populus;Arabidopsis thaliana;AP2/ERF;transcriptional factor;in silica cloning;bioinformatics

期刊名称：BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS （ 影响因子：3.575； 五年影响因子：3.381 ）

ISSN： 0006-291X

年卷期： 2008 年 371 卷 3 期

页码：

收录情况： SCI

摘要： Populus is a model system for investigating the wood development, crown formation, and disease resistance in perennial plants. AR2/ERF is a large family of transcription factors in plant, encoding transcriptional regulators with a variety of functions involved in the developmental and physiological processes. Here, starting from database of Populus genome, we identified 200 AP2/ERF genes by in silica cloning method using the AP2/ERF conserved domain amino acid sequence of Arabidopsis thaliana as probe. Based on the number of AP2/ERF domains and the function of the genes, those AP2/ERF genes from Populus were classified into four subfamilies named the AP2, DREB, ERF, RAV, and a soloist. Among these genes, the number genes of total AP2/ERF family genes, DREB subfamily, and ERF subfamily from Populus trichocarpa were about 1.4-1.6-fold than those from A. thaliana. The rates were very similar for the putative homologs between Populus and Arabidopsis. Crown copyright (C) 2008 Published by Elsevier Inc. All rights reserved.

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