Chromosome-level genome assembly and annotation of Japanese anchovy (Engraulis japonicus)
文献类型： 外文期刊
作者： Liu, Shufang 1 ; Wang, Le 3 ; Wang, Ruixiang 1 ; Wang, Huan 1 ; Li, Ang 1 ; An, Changting 1 ; Meng, Zining 5 ; Zhuang, Zhimeng 1 ;
作者机构： 1.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, State Key Lab Mariculture Biobreeding & Sustainabl, Qingdao 266071, Shandong, Peoples R China
2.Qingdao Marine Sci & Technol Ctr, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266237, Shandong, Peoples R China
3.Natl Univ Singapore, Temasek Life Sci Lab, Mol Populat Genet Grp, 1 Res Link, Singapore 117604, Singapore
4.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai 201306, Peoples R China
5.Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Inst Aquat Econ Anim, Guangzhou 510275, Guangdong, Peoples R China
6.Sun Yat sen Univ, Sch Life Sci, Guangdong Prov Key Lab Aquat Econ Anim, Guangzhou 510275, Guangdong, Peoples R China
期刊名称：SCIENTIFIC DATA （ 影响因子：6.9； 五年影响因子：8.7 ）
ISSN：
年卷期： 2025 年 12 卷 1 期
页码：
收录情况： SCI
摘要： The Japanese anchovy (Engraulis japonicus), a finfish with the largest biomass of a single species in the Yellow and East China Seas, plays an important pivotal role in converting zooplanktons into high trophic fish in the food web. As a result, the fish is regard as a key species in its habiting ecosystem. However, the lack of genomic resources hampers our understanding of its genetic diversity and differentiation, as well as the evolutionary dynamics. Here, we firstly report a complex chromosome-level genome assembly of E. japonicus with a large size of 1.4 Gb, with features of high repetitive sequences (54.9%), high heterozygosity (2.3%) and a number of protein-coding genes (24,405). The genome sequence exhibited a remarkable degree of completeness, valued 94.07% of the complete BUSCO. This work firstly reported the genome sequence of E. japonicus, offering the crucial resources for further studies on the genetic diversity and adaptive evolution of this species.
- 相关文献
作者其他论文 更多>>
-
DNA Barcode and Correct Scientific Name of Golden Pompano, an Important Marine Aquaculture Fish Species in China
作者：Li, Ang;An, Changting;Wang, Huan;Che, Shuai;Liu, Shufang;Zhuang, Zhimeng;Li, Ang;An, Changting;Wang, Huan;Che, Shuai;Liu, Shufang
关键词：golden pompano;
Trachinotus ovatus ; DNA barcoding; synonym; cryptic species -
Seasonal Shifts of Morphological Traits and Dietary of Mactra veneriformis (Bivalvia: Mactridae) Populations in the Northern Yellow River Delta's Intertidal Zone
作者：Xu, Shuangfeng;Xu, Shuangfeng;Li, Ang;Zhu, Ling;Wu, Biao;Liu, Lulei;Jiao, Minghui;Li, Jiaqi;Xue, Suyan;Mao, Yuze;Xu, Shuangfeng;Li, Ang;Zhu, Ling;Wu, Biao;Liu, Lulei;Jiao, Minghui;Li, Jiaqi;Xue, Suyan;Mao, Yuze
关键词：seasonal variation; geometric morphometrics; dietary composition; high-throughput sequencing
-
A functional role for myostatin in muscle hyperplasia and hypertrophy revealed by comparative transcriptomics in Yesso scallop Patinopecten yessoensis
作者：Yang, Hongsu;Wu, Biao;Liu, Zhihong;Liu, Shufang;Sun, Xiujun;Zhou, Liqing;Yang, Hongsu;Wu, Biao;Liu, Zhihong;Liu, Shufang;Sun, Xiujun;Zhou, Liqing;Yang, Hongsu;Zheng, Yanxin;Yu, Tao
关键词：Yesso scallop; Myostatin; Muscle fiber
-
Increases in forest carbon stocks of up to 32% by 2100 across the subalpine forests of the Tibetan Plateau
作者：Li, Ting;Wang, Huan;Wang, Jicheng;Li, Xiaorui;Wang, Qi;Wang, Qi;Liao, Zhanmang;Luo, Peng;Luo, Peng;Lai, Changhong;Liu, Yang;Jian, Yi
关键词：Climate velocity; Forest recovery; Growth; Mortality; Mountain forests; Stand age
-
Diet composition and feeding habits of Meretrix meretrix and Mactra veneriformis in the northern Bohai Sea based on high-throughput sequencing
作者：Li, Ang;Zhu, Ling;Xue, Suyan;Li, Jiaqi;Li, Xianglun;Liu, Lulei;Liu, Longzhen;Mao, Yuze;Li, Ang;Zhu, Ling;Xue, Suyan;Li, Jiaqi;Li, Xianglun;Liu, Lulei;Liu, Longzhen;Mao, Yuze;Bai, Yongan
关键词：
-
Structural Characteristics of Mitochondrial Genomes of Two Species of Mackerel and Phylogenetic Analysis of Scombridae Family
作者：Yang, Jianqi;Li, Ang;Liu, Shufang;Yang, Jianqi;Li, Ang;Liu, Shufang
关键词：
Scomberomorus guttatus ;Scomberomorus commerson ; mitochondrial genome; sequence analysis; systematic evolution -
Increasing alkalinity to mitigate biogenic acidification and its negative effects during the North-south-relay transportation of abalone
作者：Li, Jiamin;Li, Jiamin;Li, Jiaqi;Jiao, Minghui;Li, Ang;Liu, Zirong;Shen, Zhongzhi;Xue, Suyan;Liu, Lulei;Mao, Yuze;Li, Jiaqi;Jiao, Minghui;Li, Ang;Liu, Zirong;Shen, Zhongzhi;Xue, Suyan;Liu, Lulei;Mao, Yuze;Zhang, Yitao
关键词：Biogenic acidification; Carbonate system; Mollusks; North-south-relay aquaculture model; Total alkalinity
