Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection
文献类型： 外文期刊
作者： Cheng, Feng 1 ; Wu, Jian 1 ; Cai, Chengcheng 1 ; Fu, Lixia 1 ; Liang, Jianli 1 ; Borm, Theo; Zhuang, Mu 1 ; Zhang, Yan 1 ;
作者机构： 1.Chinese Acad Agr Sci, Minist Agr, Key Lab Biol & Genet Improvement Hort Crops, Sinodutch Joint Lab Hort Gen,Inst Vegetables & Fl, Beijing 10081, Peoples R China
2.Chinese Acad Agr Sci, Minist Agr, Key Lab Biol & Gen
期刊名称：SCIENTIFIC DATA （ 影响因子：6.444； 五年影响因子：9.051 ）
ISSN： 2052-4463
年卷期： 2016 年 3 卷
页码：
收录情况： SCI
摘要： The closely related species Brassica rapa and B. oleracea encompass a wide range of vegetable, fodder and oil crops. The release of their reference genomes has facilitated resequencing collections of B. rapa and B. oleracea aiming to build their variome datasets. These data can be used to investigate the evolutionary relationships between and within the different species and the domestication of the crops, hereafter named morphotypes. These data can also be used in genetic studies aiming at the identification of genes that influence agronomic traits. We selected and resequenced 199 B. rapa and 119 B. oleracea accessions representing 12 and nine morphotypes, respectively. Based on these resequencing data, we obtained 2,249,473 and 3,852,169 high quality SNPs (single-nucleotide polymorphisms), as well as 303,617 and 417,004 InDels for the B. rapa and B. oleracea populations, respectively. The variome datasets of B. rapa and B. oleracea represent valuable resources to researchers working on evolution, domestication or breeding of Brassica vegetable crops.
- 相关文献
作者其他论文 更多>>
-
Rapid introgression of the clubroot resistance gene CRa into cabbage skeleton inbred lines through marker assisted selection
作者：Zhang, Na;Zhu, Mingzhao;Qiu, Yuting;Fang, Zhiyuan;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao;Ji, Jialei;Yang, Limei;Wang, Yong;Zhu, Mingzhao;Hou, Xilin
关键词：Clubroot; Breeding; Backcross; Marker assisted selection
-
The giant genome of lily provides insights into the hybridization of cultivated lilies
作者：Liang, Yuwei;Gao, Qiang;Zhang, Liangsheng;Li, Fan;Duan, Qing;Li, Shenchong;Jin, Chunlian;Zhang, Peihua;Wang, Jihua;Li, Fan;Duan, Qing;Li, Shenchong;Jin, Chunlian;Zhang, Peihua;Wang, Jihua;Du, Yunpeng;Pan, Wenqiang;Zhang, Xiuhai;Zhang, Mingfang;Wu, Jian;Pan, Wenqiang;Wang, Shaokun;Song, Xiaoming;Zhong, Linlin;Zhang, Fan;Li, Yan;Wang, Zhiwei;Li, Danqing;Gu, Yang;Chen, Zhong-Hua;Chen, Zhong-Hua;Mayer, Klaus F. X.;Mayer, Klaus F. X.;Zhou, Xiaofan;Zhang, Liangsheng;Zhang, Liangsheng
关键词：
-
The NAC transcription factor LpNAC48 promotes trichome formation in Lilium pumilum
作者：Xin, Yin;Pan, Wenqiang;Wu, Jingxiang;Zhang, Mingfang;Ma, Yang;Zhang, Xiuhai;Du, Yunpeng;Xin, Yin;Pan, Wenqiang;Zhao, Yajie;Li, Jingru;Wang, Shaokun;Wu, Jingxiang;Shi, Jinxin;Ma, Yang;Wu, Jian;Pan, Wenqiang;Zhang, Xiuhai;Du, Yunpeng;Yang, Chenglong;Fang, Shaozhong;Liang, Yuwei;Zaccai, Michele
关键词：
-
BrHDA6 mediates nonhistone deacetylation of BrSOT12 to positively regulate downy mildew resistance in Brassica rapa
作者：Wang, Jianxing;Zheng, Mei;Su, Tongbing;Zhang, Bin;Ma, Tao;Liu, Xiaojing;Li, Peirong;Xin, Xiaoyun;Wang, Weihong;Zhao, Xiuyun;Zhang, Deshuang;Yu, Yangjun;Wang, Jiao;Zhang, Fenglan;Yu, Shuancang;Wang, Jianxing;Zheng, Mei;Su, Tongbing;Zhang, Bin;Ma, Tao;Liu, Xiaojing;Li, Peirong;Xin, Xiaoyun;Wang, Weihong;Zhao, Xiuyun;Zhang, Deshuang;Yu, Yangjun;Wang, Jiao;Zhang, Fenglan;Yu, Shuancang;Wang, Jianxing;Zheng, Mei;Su, Tongbing;Zhang, Bin;Ma, Tao;Liu, Xiaojing;Li, Peirong;Xin, Xiaoyun;Wang, Weihong;Zhao, Xiuyun;Zhang, Deshuang;Yu, Yangjun;Wang, Jiao;Zhang, Fenglan;Yu, Shuancang;Zhao, Wenchao
关键词：
-
Exogenous Gibberellin Delays Postharvest Leaf Senescence in Pak Choi by Modulating Transcriptomic and Metabolomic Profiles
作者：Wang, Dan;Zhou, Linyi;Wang, Dan;Zhao, Xiuyun;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhang, Bin;Zhang, Deshuang;Yu, Yangjun;Zhang, Fenglan;Li, Peirong;Yu, Shuancang;Wang, Dan;Zhao, Xiuyun;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhang, Bin;Zhang, Deshuang;Yu, Yangjun;Zhang, Fenglan;Li, Peirong;Yu, Shuancang;Wang, Dan;Zhao, Xiuyun;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhang, Bin;Zhang, Deshuang;Yu, Yangjun;Zhang, Fenglan;Li, Peirong;Yu, Shuancang;Wang, Dan;Zhao, Xiuyun;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhang, Bin;Zhang, Deshuang;Yu, Yangjun;Zhang, Fenglan;Li, Peirong;Yu, Shuancang;Wang, Zhongjiang
关键词：gibberellin; chlorophyll degradation; leaf senescence; storage; pak choi
-
Genome assembly of the plant pathogen Plasmodiophora brassicae reveals novel secreted proteins contributing to the infection of Brassica rapa
作者：Li, Peirong;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhao, Xiuyun;Li, Xiaoman;Zhang, Deshuang;Yu, Yangjun;Ma, Tao;Zhang, Fenglan;Yu, Shuancang;Li, Peirong;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhao, Xiuyun;Li, Xiaoman;Zhang, Deshuang;Yu, Yangjun;Ma, Tao;Zhang, Fenglan;Yu, Shuancang;Li, Peirong;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhao, Xiuyun;Li, Xiaoman;Zhang, Deshuang;Yu, Yangjun;Ma, Tao;Zhang, Fenglan;Yu, Shuancang;Li, Peirong;Su, Tongbing;Wang, Weihong;Xin, Xiaoyun;Zhao, Xiuyun;Li, Xiaoman;Zhang, Deshuang;Yu, Yangjun;Ma, Tao;Zhang, Fenglan;Yu, Shuancang;Lv, Sirui;Zhang, Zhijun;Lv, Sirui;Zhang, Zhijun;Liu, Guodong
关键词：Plasmodiophora brassicae; Clubroot; Brassica rapa; Genome; Secreted protein; Serine hydroxymethyltransferase
-
A multi-channel CRISPR-based method for rapid, sensitive detection of four diseases of Brassica rapa in the field
作者：Liu, Xiaojing;Su, Tongbing;Xin, Xiaoyun;Li, Peirong;Wang, Weihong;Zhao, Xiuyun;Zhang, Deshuang;Yu, Yangjun;Wang, Jiao;Li, Ning;Zhang, Fenglan;Yu, Shuancang;Liu, Xiaojing;Su, Tongbing;Xin, Xiaoyun;Li, Peirong;Wang, Weihong;Zhao, Xiuyun;Zhang, Deshuang;Yu, Yangjun;Wang, Jiao;Li, Ning;Zhang, Fenglan;Yu, Shuancang;Liu, Xiaojing;Su, Tongbing;Xin, Xiaoyun;Li, Peirong;Wang, Weihong;Zhao, Xiuyun;Zhang, Deshuang;Yu, Yangjun;Wang, Jiao;Li, Ning;Zhang, Fenglan;Yu, Shuancang;Liu, Xiaojing;Su, Tongbing;Xin, Xiaoyun;Li, Peirong;Wang, Weihong;Zhao, Xiuyun;Zhang, Deshuang;Yu, Yangjun;Li, Ning;Zhang, Fenglan;Yu, Shuancang;Wang, Miao;Wang, Miao;Song, Cancan
关键词：
