Genome-wide quantitative trait loci reveal the genetic basis of cotton fibre quality and yield-related traits in a Gossypium hirsutum recombinant inbred line population
文献类型: 外文期刊
作者: Zhang, Zhen 1 ; Li, Junwen 2 ; Jamshed, Muhammad 3 ; Shi, Yuzhen 1 ; Liu, Aiying 1 ; Gong, Juwu 1 ; Wang, Shufang 1 ; Zhang, Jianhong 1 ; Sun, Fuding 1 ; Jia, Fei 1 ; Ge, Qun 1 ; Fan, Liqiang 1 ; Zhang, Zhibin 1 ; Pan, Jingtao 1 ; Fan, Senmiao 1 ; Wang, Yanling 1 ; Lu, Quanwei 4 ; Liu, Ruixian 1 ; Deng, Xiaoying 1 ; Zou, Xianyan 1 ; Jiang, Xiao 1 ; Liu, Ping 1 ; Li, Pengtao 4 ; Iqbal, Muhammad Sajid 1 ; Zhang, Chuanyun 6 ; Zou, Juan 6 ; Chen, Hong 7 ; Tian, Qin 7 ; Jia, Xinhe 8 ; Wang, Baoqin 8 ; Ai, Nijiang 9 ; Feng, Guoli 9 ; Wang, Yumei 10 ; Hong, Mei 11 ; Li, Shilin 11 ; Lian, Wenming 12 ; Wu, Bo 12 ; Hua, Jinping 13 ; Zhang, Chaojun 1 ; Huang, Jinyong 2 ; Xu, Aixia 5 ; Shang, Haihong 2 ; Gong, Wankui 4 ; Yuan, Youlu 4 ;
作者机构: 1.Chinese Acad Agr Sci, Inst Cotton Res, State Key Lab Cotton Biol, Key Lab Biol & Genet Breeding Cotton,Minist Agr, Anyang, Peoples R China
2.Zhengzhou Univ, State Key Lab Cotton Biol, Zhengzhou Res Base, Zhengzhou, Peoples R China
3.Univ Agr Faisalabad, Dept Biochem, Faisalabad, Pakistan
4.Anyang Inst Technol, State Key Lab Cotton Biol, Res Base, Anyang, Peoples R China
5.Northwest A&F Univ, Coll Agron, State Key Lab Crop Stress Biol Arid Areas, Yangling, Shaanxi, Peoples R China
6.Shandong Cotton Res Ctr, Jinan, Peoples R China
7.Xinjiang Acad Agr & Reclamat Sci, Cotton Res Inst, Xinjiang, Peoples R China
8.Zhengzhou Res Inst Agr & Forestry Sci, Zhengzhou, Peoples R China
9.Shihezi Agr Sci & Technol Res Ctr, Shihezi, Peoples R China
10.Hubei Acad Agr Sci, Inst Cash Crops, Wuhan, Peoples R China
11.Inst Agr, Korla, Xinjiang, Peoples R China
12.Xinjiang Prod & Construct Corps, Inst Agr Sci & Technol, Agr Prod Div 1, Alar, Xinjiang, Peoples R China
13.China Agr Univ, Beijing Key Lab Crop Genet Improvement, Coll Agron & Biotechnol, Key Lab Crop Heterosis & Utilizat,Minist Educ, Beijing, Peoples R China
关键词: upland cotton; consensus genetic map; fibre quality; fibre yield; QTL clusters; genetic correlation; gene expression level
期刊名称:PLANT BIOTECHNOLOGY JOURNAL ( 影响因子:9.803; 五年影响因子:9.555 )
ISSN: 1467-7644
年卷期: 2020 年 18 卷 1 期
页码:
收录情况: SCI
摘要: Cotton is widely cultivated globally because it provides natural fibre for the textile industry and human use. To identify quantitative trait loci (QTLs)/genes associated with fibre quality and yield, a recombinant inbred line (RIL) population was developed in upland cotton. A consensus map covering the whole genome was constructed with three types of markers (8295 markers, 5197.17 centimorgans (cM)). Six fibre yield and quality traits were evaluated in 17 environments, and 983 QTLs were identified, 198 of which were stable and mainly distributed on chromosomes 4, 6, 7, 13, 21 and 25. Thirty-seven QTL clusters were identified, in which 92.8% of paired traits with significant medium or high positive correlations had the same QTL additive effect directions, and all of the paired traits with significant medium or high negative correlations had opposite additive effect directions. In total, 1297 genes were discovered in the QTL clusters, 414 of which were expressed in two RNA-Seq data sets. Many genes were discovered, 23 of which were promising candidates. Six important QTL clusters that included both fibre quality and yield traits were identified with opposite additive effect directions, and those on chromosome 13 (qClu-chr13-2) could increase fibre quality but reduce yield; this result was validated in a natural population using three markers. These data could provide information about the genetic basis of cotton fibre quality and yield and help cotton breeders to improve fibre quality and yield simultaneously.
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