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Transcriptome analysis of different rice cultivars provides novel insights into the rice response to bacterial leaf streak infection

文献类型： 外文期刊

作者： Lu, Ling 1 ; Yang, Dewei 1 ; Tang, Dingzhong 1 ; Li, Shengping 1 ; Chen, Zhiwei 1 ;

作者机构： 1.Fujian Agr & Forestry Univ, Minist Educ, Key Lab Genet Breeding & Multiple Utilizat Crops, Fuzhou 350002, Peoples R China

2.Fujian Agr & Forestry Univ, Plant Immun Ctr, Fuzhou 350002, Peoples R China

3.Fujian Acad Agr Sci, Rice Res Inst, Fuzhou 350019, Peoples R China

关键词： Rice; Bacterial leaf streak; Plant defence response; RNA-Seq

期刊名称：FUNCTIONAL & INTEGRATIVE GENOMICS （ 影响因子：3.41； 五年影响因子：3.616 ）

ISSN： 1438-793X

年卷期： 2020 年 20 卷 5 期

页码：

收录情况： SCI

摘要： Bacterial leaf streak (BLS) is now the fourth-most devastating disease in rice. Dular and H359 are twoindicarice varieties with contrasting responses to BLS. Dular displays high resistance, while H359 is susceptible. In this study, RNA-seq was used to examine the early molecular processes deployed during the resistance response of Dular and H359 at different times after inoculation. Differentially expressed gene (DEG) analysis identified 3031 genes in Dular and 7161 in H359 that were modulated in response to infection after 12 and 24 h. There were significantly more DEGs in H359 than in Dular, and there were significantly more downregulated genes than upregulated genes. Gene ontology (GO) and KEGG enrichment analyses revealed a similar set of GO terms and KEGG pathways enriched in both varieties. However, KEGG analysis of upregulated DEGs revealed that some phenylpropane metabolism-related pathways were specially enriched in Dular. Further comparison and analysis showed that the numbers of resistance-related DEGs in the two varieties were significantly reduced at 24 h compared with 12 h after BLS infection and genes critically involved in conferring resistance during the early stage mainly included WRKY transcription factors, receptor kinases and disease, exocyst, MAPK signalling pathway and hormones related genes. Our study suggests that resistance-related genes may play an important role at an early stage of infection and phenylpropane metabolism related genes may partly response for BLS resistance of Dular, thus providing valuable information for future studies on the molecular mechanisms of BLS resistance in rice.

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