Genome-Wide Identification of YABBY Genes in Orchidaceae and Their Expression Patterns in Phalaenopsis Orchid
文献类型： 外文期刊
作者： Chen, You-Yi 1 ; Hsiao, Yu-Yun 2 ; Chang, Song-Bin 1 ; Zhang, Diyang 4 ; Lan, Si-Ren 4 ; Liu, Zhong-Jian 4 ; Tsai, Wen 1 ;
作者机构： 1.Natl Cheng Kung Univ, Dept Life Sci, Tainan 701, Taiwan
2.Natl Cheng Kung Univ, Orchid Res & Dev Ctr, Tainan 701, Taiwan
3.Natl Cheng Kung Univ, Inst Trop Plant Sci & Microbiol, Tainan 701, Taiwan
4.Fujian Agr & Forestry Univ, Key Lab Natl Forestry & Grassland Adm Orchid Cons, Coll Landscape Architecture, Fuzhou 350002, Peoples R China
5.Zhejiang Acad Agr Sci, Zhejiang Inst Subtrop Crops, Wenzhou 325005, Peoples R China
6.Tsinghua Univ, Ctr Biotechnol & Biomed, Tsinghua Shenzhen Int Grad Sch, Shenzhen Key Lab Gene & Antibody Therapy,State Ke, Shenzhen 518055, Peoples R China
7.Shaoguan Univ, Henry Fok Coll Biol & Agr, Shaoguan 512005, Peoples R China
关键词： Orchidaceae; Phalaenopsis equestris; YABBY gene; genome-wide; expression pattern
期刊名称：GENES （ 影响因子：4.096； 五年影响因子：4.339 ）
ISSN：
年卷期： 2020 年 11 卷 9 期
页码：
收录情况： SCI
摘要： The plant YABBY transcription factors are key regulators in the lamina development of lateral organs. Orchid is one of the largest families in angiosperm and known for their unique floral morphology, reproductive biology, and diversified lifestyles. However, nothing is known about the role of YABBY genes in orchids, although biologists have never lost their fascination with orchids. In this study, a total of 54 YABBY genes, including 15 genes in CRC/DL, eight in INO, 17 in YAB2, and 14 in FIL clade, were identified from the eight orchid species. A sequence analysis showed that all protein sequences encoded by these YABBY genes share the highly conserved C2C2 zinc-finger domain and YABBY domain (a helix-loop-helix motif). A gene structure analysis showed that the number of exons is highly conserved in the same clades. The genes in YAB2 clade have six exons, and genes in CRC/DL, INO, and FIL have six or seven exons. A phylogenetic analysis showed all 54 orchid YABBY genes could be classified into four major clades, including CRC/DL, INO, FIL, and YAB2. Many of orchid species maintain more than one member in CRC/DL, FIL, and YAB2 clades, implying functional differentiation among these genes, which is supported by sequence diversification and differential expression. An expression analysis of Phalaenopsis YABBY genes revealed that members in the CRC/DL clade have concentrated expressions in the early floral development stage and gynostemium, the fused male and female reproductive organs. The expression of PeINO is consistent with the biological role it played in ovule integument morphogenesis. Transcripts of members in the FIL clade could be obviously detected at the early developmental stage of the flowers. The expression of three genes, PeYAB2, PeYAB3, and PeYAB4, in the YAB2 clade could be revealed both in vegetative and reproductive tissues, and PeYAB4 was transcribed at a relatively higher level than that of PeYAB2 and PeYAB3. Together, this comprehensive analysis provides the basic information for understanding the function of the YABBY gene in Orchidaceae.
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