文献类型： 外文期刊
作者： Xu, Yueren 1 ; Lei, Bingbing 1 ; Zhang, Qingfeng 2 ; Lei, Yunjiao 1 ; Li, Cunyuan 3 ; Li, Xiaoyue 1 ; Yao, Rui 1 ; Hu, Ruirui 1 ; Liu, Kaiping 1 ; Wang, Yue 1 ; Cui, Yuying 1 ; Wang, Limin 4 ; Dai, Jihong 1 ; Li, Lei 1 ; Ni, Wei 1 ; Zhou, Ping 4 ; Liu, Ze-Xian 2 ; Hu, Shengwei 1 ;
作者机构： 1.Shihezi Univ, Coll Life Sci, Shihezi 832003, Xinjiang, Peoples R China
2.Sun Yat Sen Univ, Collaborat Innovat Ctr Canc Med, State Key Lab Oncol South China, Canc Ctr, Guangzhou 510060, Peoples R China
3.Shihezi Univ, Coll Anim Sci & Technol, Shihezi 832003, Xinjiang, Peoples R China
4.Xinjiang Acad Agr & Reclamat Sci, State Key Lab Sheep Genet Improvement & Hlth Prod, Shihezi 832003, Xinjiang, Peoples R China
关键词： Gut microbiota; Metagenomics; Domestic animals; Phenotypes; Database
期刊名称：COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL （ 影响因子：6.155； 五年影响因子：6.836 ）
ISSN： 2001-0370
年卷期： 2022 年 20 卷
页码：
收录情况： SCI
摘要： Animal gut microbiomes play important roles in the health, diseases, and production of animal hosts. The volume of animal gut metagenomic data, including both 16S amplicon and metagenomic sequencing data, has been increasing exponentially in recent years, making it increasingly difficult for researchers to query, retrieve, and reanalyze experimental data and explore new hypotheses. We designed a database called the domestic animal gut microbiome atlas (ADDAGMA) to house all publicly available, high-throughput sequencing data for the gut microbiome in domestic animals. ADDAGMA enhances the availability and accessibility of the rapidly growing body of metagenomic data. We annotated microbial and metadata from four domestic animals (cattle, horse, pig, and chicken) from 356 published papers to construct a comprehensive database that is equipped with browse and search functions, enabling users to make customized, complicated, biologically relevant queries. Users can quickly and accurately obtain experimental information on sample types, conditions, and sequencing platforms, and experimental results including microbial relative abundances, microbial taxon-associated host phenotype, and P-values for gut microbes of interest. The current version of ADDAGMA includes 290,422 quantification events (changes in abundance) for 3215 microbial taxa associated with 48 phenotypes. ADDAGMA presently covers gut microbiota sequencing data from pig, cattle, horse, and chicken, but will be expanded to include other domestic animals. ADDAGMA is freely available at (http://addagma.omicsbio.info/). (C) 2022 The Authors. Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.
- 相关文献
作者其他论文 更多>>
-
The HTIRDB: A resource containing a transcriptional atlas for 105 different tissues from each of seven species of domestic herbivore
作者：Ding, Luoyang;Wang, Yifan;Wu, Feifan;Zhen, Yongkang;Blache, Dominique;Li, Chuang;Yu, Xiang;Zhang, Zhenbin;Chen, Yifei;Xue, Chun;Gu, Yalan;Huang, Weidong;Yan, Lu;Wei, Wenjun;Wang, Yusu;Zhang, Jinying;Zhang, Yifan;Sun, Yiquan;Wang, Mengzhi;Wang, Yifan;Zhang, Linna;Huang, Yiming;Zhen, Yongkang;Chen, Ning;Wang, Limin;Zhou, Ping;Yang, Qing-Yong;Wang, Mengzhi;Zhang, Linna;Luo, Chengfang;Huang, Yiming;Liu, Dongxu;Yang, Zhiquan;Huang, Xiaoyan;Dai, Rui;Wang, Shengbo;Zhao, Xinle;Wang, Haodong;Yang, Qing-Yong;Song, Li;Pool, Kelsey;Blache, Dominique;Maloney, Shane K.
关键词：
-
Analysis of Oestrus and Hormonal Changes in the Progeny of 2 Genotypes of FecB Gene-Edited Sheep
作者：Yang, Chulei;Zhang, Yiyuan;Tang, Hong;Guo, Yanhua;Wang, Limin;Zhou, Ping
关键词：FecB gene; gene editing; hormonal changes; oestrus
-
Multiomic analysis of different horse breeds reveals that gut microbial butyrate enhances racehorse athletic performance
作者：Li, Cunyuan;Li, Xiaoyue;Liu, Kaiping;Yu, Jinming;Liu, Zhuang;Ni, Wei;Hu, Shengwei;Li, Cunyuan;Ni, Wei;Zhou, Ping;Wang, Limin;Hu, Shengwei;Xu, Junli;Liu, Chen;Mach, Nuria
关键词：
-
Unexplored diversity and potential functions of extra-chromosomal elements
作者：Liu, Haoyu;Sun, Jia;Si, Juanjuan;Liao, Yi;Bai, Jiaqi;Ni, Wei;Hu, Shengwei;Li, Xia;Wang, Limin;Zhou, Ping;Cai, Kuojun
关键词：
c hromid; bacterial respiratory chain; antiviral systems; chromid-finder tool -
Testosterone suppression with or without testicular Preservation: Impact on mouse behavior, including emotional state, locomotor activity, social interaction, cognitive function, and sexual behavior
作者：Zang, Yaxin;Lin, Liuxia;Lu, Yigeng;Luo, Mengzhen;Ma, Jian;Du, Chunmei;Wei, Chen;Gao, Rui;Gan, Shangquan;Zang, Yaxin;Liu, Wujun;Lin, Liuxia;Wang, Limin;Xu, Mengsi;Huang, Amei
关键词：Testosterone suppression; Surgical castration; GnRH immunocastration; Behavior; Animal welfare and ethics
-
De novo transcriptome assembly database for 100 tissues from each of seven species of domestic herbivore
作者：Wang, Yifan;Huang, Yiming;Wang, Limin;Chen, Ning;Yang, Qing-Yong;Zhou, Ping;Wang, Yifan;Zhen, Yongkang;Wang, Jiasheng;Wu, Feifan;Li, Chuang;Yu, Xiang;Zhang, Zhenbin;Chen, Yifei;Xue, Chun;Gu, Yalan;Huang, Weidong;Yan, Lu;Wei, Wenjun;Wang, Yusu;Zhang, Jinying;Zhang, Yifan;Sun, Yiquan;Ding, Luoyang;Wang, Mengzhi;Wang, Yifan;Li, Song;Huang, Yiming;Zhang, Linna;Liu, Dongxu;Yang, Zhiquan;Wang, Shengbo;Zhao, Xinle;Luo, Chengfang;Wang, Haodong;Yang, Qing-Yong;Huang, Yiming;Zhang, Linna;Liu, Dongxu;Yang, Zhiquan;Wang, Shengbo;Zhao, Xinle;Luo, Chengfang;Wang, Haodong;Yang, Qing-Yong;Shen, Yizhao;Bi, Congliang;Pool, Kelsey;Blache, Dominique;Maloney, Shane K.;Ding, Luoyang
关键词：
-
Integrative Meta-Analysis: Unveiling Genetic Factors in Meat Sheep Growth and Muscular Development through QTL and Transcriptome Studies
作者：Rehman, Shahab Ur;Zhen, Yongkang;Ding, Luoyang;Zhang, Yifan;Zhang, Jinying;He, Feiyang;Husien, Hosameldeen Mohamed;Wang, Mengzhi;Saleh, Ahmed A.;Saleh, Ahmed A.;Zhou, Ping;Wang, Mengzhi
关键词：meat sheep; growth performance; genetic parameter; integrative meta-analysis; transcriptome analysis
