Genome-Wide Identification and Preliminary Functional Analysis of BAM (β-Amylase) Gene Family in Upland Cotton
文献类型： 外文期刊
作者： Yang, Yanlong 1 ; Sun, Fenglei 3 ; Wang, Penglong 2 ; Yusuyin, Mayila 1 ; Kuerban, Wumaierjiang 2 ; Lai, Chengxia 1 ; Li, Chunping 1 ; Ma, Jun 1 ; Xiao, Fei 4 ;
作者机构： 1.Xinjiang Acad Agr Sci, Res Inst Econ Crops, Urumqi 830091, Peoples R China
2.Xinjiang Acad Agr Sci, Kuqa Cty Upland Cotton Test Stn, Kuqa 842000, Peoples R China
3.Chinese Acad Agr Sci, Inst Cotton Res, State Key Lab Cotton Biol, Anyang 455000, Peoples R China
4.Xinjiang Univ, Coll Life Sci & Technol, Xinjiang Key Lab Biol Resources & Genet Engn, Urumqi 830046, Peoples R China
关键词： beta-amylase (BAM) gene family; upland cotton; genome-wide identification; fiber development; starch metabolism
期刊名称：GENES （ 影响因子：3.5； 五年影响因子：3.9 ）
ISSN：
年卷期： 2023 年 14 卷 11 期
页码：
收录情况： SCI
摘要： The beta-amylase (BAM) gene family encodes important enzymes that catalyze the conversion of starch to maltose in various biological processes of plants and play essential roles in regulating the growth and development of multiple plants. So far, BAMs have been extensively studied in Arabidopsis thaliana (A. thaliana). However, the characteristics of the BAM gene family in the crucial economic crop, cotton, have not been reported. In this study, 27 GhBAM genes in the genome of Gossypium hirsutum L (G. hirsutum) were identified by genome-wide identification, and they were divided into three groups according to sequence similarity and phylogenetic relationship. The gene structure, chromosome distribution, and collinearity of all GhBAM genes identified in the genome of G. hirsutum were analyzed. Further sequence alignment of the core domain of glucosyl hydrolase showed that all GhBAM family genes had the glycosyl hydrolase family 14 domain. We identified the BAM gene GhBAM7 and preliminarily investigated its function by transcriptional sequencing analysis, qRT-PCR, and subcellular localization. These results suggested that the GhBAM7 gene may influence fiber strength during fiber development. This systematic analysis provides new insight into the transcriptional characteristics of BAM genes in G. hirsutum. It may lay the foundation for further study of the function of these genes.
- 相关文献
作者其他论文 更多>>
-
Quantitative trait locus mapping and identification of candidate genes for resistance to Verticillium wilt in four recombinant inbred line populations of Gossypium hirsutum (vol 327, 111562, 2023)
作者：Wang, Yuxiang;Zhao, Jieyin;Chen, Qin;Zheng, Kai;Deng, Xiaojuan;Gao, Wenju;Geng, Shiwei;Deng, Yahui;Chen, Quanjia;Qu, Yanying;Li, Chunping;Pei, Wenfeng
关键词：
-
Photosynthetic mechanism of cotton under fluctuating light field planted with different densities
作者：Lei, Zhangying;Li, Xilin;Zhang, Tong;Li, Xiaoming;He, Daohua;Li, Youzhong;Yang, Yanlong;Zhang, Yali
关键词：Plant density; Light intensity; Frequence of fluctuation light; Photosynthesis; Biomass
-
Late embryogenesis abundant gene GhLEA-5 of semi-wild cotton positively regulates salinity tolerance in upland cotton
作者：Tian, Chunyan;Rehman, Abdul;Li, Hongge;Du, Xiongming;Peng, Zhen;He, Shoupu;Wang, Xiaoyang;Li, Hongge;Du, Xiongming;Peng, Zhen;He, Shoupu;Peng, Zhen;He, Shoupu;Wang, Zhenzhen;Ma, Jun
关键词：Cotton; Salt tolerance; GhLEA-5; Functional verification
-
Evaluation of Salt-Tolerant Germplasms and Identification of Salt Tolerance-Related Proteins in Upland Cotton at the Seedling Stage
作者：Li, Xiawen;Rehman, Abdul;Li, Hongge;Peng, Zhen;He, Shoupu;Rehman, Abdul;Li, Hongge;Du, Xiongming;Peng, Zhen;He, Shoupu;Wang, Zhenzhen;Ma, Jun;Peng, Zhen;He, Shoupu
关键词：upland cotton;
Gossypium purpurascens ; TMT-based proteome; salt-tolerant proteins; differential enrichment; biological pathways -
Comprehensive identification of cotton EPF/EPFL receptors and functional characterization of the GhEPFL1-1-GhER1 module in drought tolerance
作者：He, Shichang;Chen, Qing;Chang, Saiwen;Lu, Shuaiqi;Liang, Zhencai;Yang, Julan;Fei, Xiao;Sun, Huijian;Yang, Yanlong;Zhou, Zixin
关键词：EPF/EPFL; Gene family analysis; Cotton; Drought stress;
GhEPFL1-1 ;GhER1 ;GhSERK17 -
Ellagic acid on milk production performance, blood and milk hormones, antioxidant capacity and fecal microbial communities in lactating Yili mares
作者：Huang, Xinxin;He, Linjiao;Li, Jiahao;Zang, Changjiang;Li, Xiaobin;Huang, Xinxin;He, Linjiao;Li, Jiahao;Zang, Changjiang;Li, Xiaobin;Ma, Jun;Li, Yuqi;Hou, Min
关键词：ellagic acid; Yili mares; lactation performance; hormones; antioxidant; fecal microorganism
-
A panoramic view of cotton resistance to Verticillium dahliae: From genetic architectures to precision genomic selection
作者：Zhang, Xiaojun;Liu, Shiming;Wu, Peng;Xu, Wanying;Yang, Dingyi;Ming, Yuqing;Xiao, Shenghua;Wang, Weiran;Gao, Zhan;Lv, Junyuan;Wu, Fei;Yang, Zhaoguang;Zheng, Baoxin;Du, Ping;Wang, Jiangmei;Ding, Hao;Lin, Zhongxu;You, Chunyuan;Wang, Maojun;Jin, Shuangxia;Zhang, Xianlong;Zhu, Longfu;Zhang, Xiaojun;Liu, Shiming;Wu, Peng;Xu, Wanying;Yang, Dingyi;Ming, Yuqing;Lv, Junyuan;Wu, Fei;Zheng, Baoxin;Du, Ping;Wang, Jiangmei;You, Chunyuan;Wang, Maojun;Jin, Shuangxia;Zhang, Xianlong;Zhu, Longfu;Wang, Weiran;Ma, Jun;Kong, Jie;Aierxi, Alifu;Nie, Xinhui;Yu, Yu;Gao, Wei;Lindsey, Keith;Stajner, Natasa;Wu, Jiahe
关键词：armadillo-repeat protein; cotton; genomic selection; genome-wide association studies; ROS homeostasis; transcriptome-wide association studies; Verticillium wilt
