您好，欢迎访问广东省农业科学院 机构知识库！
广东省农业科学院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Characterization and chromosomal distribution of Ty3-gypsy-like retrotransposons in wax gourd (Benincasa hispida)

文献类型： 外文期刊

作者： Jiang, Biao 1 ; Liu, Wenrui 1 ; He, Xiaoming 1 ; Peng, Qingwu 1 ; Xie, Dasen 1 ;

作者机构： 1.Guangdong Acad Agr Sci, Vegetable Res Inst, Guangzhou 510640, Peoples R China

2.Guangdong Prov Key Lab New Technol Res Vegetables, Guangzhou 510640, Peoples R China

关键词： reverse transcriptase;heterogeneity;phylogenetic analysis;FISH

期刊名称：SCIENCEASIA （ 影响因子：0.615； 五年影响因子：0.708 ）

ISSN： 1513-1874

年卷期： 2013 年 39 卷 5 期

页码：

收录情况： SCI

摘要： Wax gourd (2n = 2x = 24) is an important vegetable species in the Cucurbitaceae family, yet little is known about its genome structure. As the largest component of most plant genomes, retrotransposons might play an important role in the genetic variation and genome evolution of wax gourd. In this study, the presence of Ty3-gypsy-like retrotransposons, their heterogeneity and chromosomal distribution in wax gourd have been investigated. The conserved domains of reverse transcriptase of Ty3-gypsy-like retrotransposons have been amplified, and this resulted in thirty-five unique sequences. Seventeen (49%) of the sequences were defective as they were disrupted by a premature stop codon and/or contained frameshift mutations. These 35 sequences were divided into four groups and showed low or even no homology with Ty3-gypsy-like sequences from other species, indicating lack of horizontal transfer. The Ty3-gypsy-like retrotransposons have a dispersed genomic organization, physically distributed on all chromosomes with clusters in the heterochromatin regions. These results suggest that retrotransposons of this kind are widely distributed in wax gourd with high copy numbers, and contributed to the formation of chromosomes with non-uniform insertion and amplification. This is the first report on the presence of reverse transcriptase sequences of Ty3-gypsy-like retrotransposons in wax gourd genome.

  • 相关文献

[1]Characterization and chromosomal organization of Ty1-copia retrotransposons in wax gourd. Jiang, Biao,Liu, Wenrui,Peng, Qingwu,He, Xiaoming,Xie, Dasen,Jiang, Biao,Liu, Wenrui,He, Xiaoming,Xie, Dasen.

[2]LTR retrotransposons cause expression changes of adjacent genes in early generations of the newly formed allotetraploid Cucumis hytivus. Jia, Li,Lou, Qunfeng,Wang, Dong,Chen, Jinfeng,Jiang, Biao.

[3]Genome-Wide Identification and Expression Profile of Dof Transcription Factor Gene Family in Pepper (Capsicum annuum L.). Wu, Zhiming,Bang, Guansheng,Cheng, Jiaowen,Cui, Junjie,Hu, Kailin,Xu, Xiaowan,Luo, Xirong,Chen, Xiaocui,Tang, Xiangqun,Qin, Cheng,Qin, Cheng. 2016

[4]Comprehensive Genomic Analysis and Expression Profiling of the NOX Gene Families under Abiotic Stresses and Hormones in Plants. Chang, Yan-Li,Miao, Hai,Yang, Shuai-Qi,Li, Ri,Wang, Xiang,Li, Wen-Qiang,Chen, Kun-Ming,Li, Wen-Yan. 2016

[5]Analysis of S1 gene of avian infectious bronchitis virus isolated in southern China during 2011-2012. Feng, Keyu,Chen, Feng,Xie, Qingmei,Feng, Keyu,Xie, Qingmei,Xue, Yu,Wang, Feng,Shu, Dingming,Xie, Qingmei. 2014

[6]Sequence and phylogenetic analysis of hemagglutinin genes of H9N2 influenza viruses isolated from chicken in China from 2013 to 2015. Su Xiao-na,Xie Qing-mei,Chen Wei-guo,Bi Ying-zuo,Chen Feng,Su Xiao-na,Xie Qing-mei,Chen Feng,Su Xiao-na,Xie Qing-mei,Chen Feng,Liao Chang-tao,Yan Zhuan-qiang. 2016

[7]Morphological and phylogenetic analysis of a microsporidium (Nosema sp.) isolated from rice stem borer, Chilo suppressalis (Walker) (Lepidoptera: Pyralidae). Yang, Qiong,Liao, Sentai,Li, Qingrong,Zhao, Chaoyi,Xiao, Yang,Ye, Mingqiang,Han, Lanzhi.

[8]Phylogenetic analysis of the citrus Huanglongbing (HLB) bacterium based on the sequences of 16S rDNA and 16S/23S rDNA intergenic regions among isolates in China. Ding, Fang,Hong, Ni,Wang, Guoping,Deng, Xiuxin,Zhong, Yun,Yi, Ganjun. 2009

[9]First report of Bradysia difformis (Diptera: Sciaridae) Damage to Phalaenopsis orchid in China. Han, Qun Xin,Cheng, Dong Mei,Luo, Juan,Zhou, Cui Zuan,Xiang, Mei Mei,Lin, Qing Sheng.

[10]Identification of a microspordium isolated from Megacopta cribraria (Hemiptera: Plataspidae) and characterization of its pathogenicity in silkworms. Xing, Dongxu,Li, Li,Liao, Sentai,Luo, Guoqing,Li, Qingrong,Xiao, Yang,Dai, Fanwei,Yang, Qiong,Xing, Dongxu.

[11]Complete genome characterization and phylogenetic analysis of three distinct buffalo-origin PCV2 isolates from China. Zhai, Shao-Lun,He, Dong-Sheng,Qi, Wen-Bao,Deng, Su-Fang,Hu, Jun,Li, Xiao-Peng,Chen, Rui-Ai,Luo, Man-Lin,Zhai, Shao-Lun,Wei, Wen-Kang,He, Dong-Sheng,Chen, Sheng-Nan,Chen, Rui-Ai,Luo, Man-Lin,Li, Lei.

[12]Identification and genomic analysis of two duck-origin Tembusu virus strains in southern China. Li, Linlin,An, Hejia,Sun, Minhua,Dong, Jiawen,Yuan, Jianfeng,Hu, Qilin,An, Hejia.

[13]Bacillus nitroreducens sp nov., a humus-reducing bacterium isolated from a compost. Guo, Junhui,Zhao, Yong,Wang, Yue Qiang,Yang, Guiqin,Zhuang, Li,Chen, Yunqi,Zhou, Shungui.

[14]Isolation and genetic characterization of a novel adeno-associated virus from Muscovy ducks in China. Su, X. N.,Zhang, X. H.,Xie, Q. M.,Chen, W. G.,Chen, F.,Su, X. N.,Zhang, X. H.,Xie, Q. M.,Chen, W. G.,Chen, F.,Su, X. N.,Zhang, X. H.,Xie, Q. M.,Chen, F.,Su, X. N.,Zhang, X. H.,Xie, Q. M.,Chen, W. G.,Chen, F.,Su, X. N.,Zhang, X. H.,Xie, Q. M.,Chen, F.,Liu, J. J.,Zhou, Q. F.,Zhao, L. C..

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：广东省农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台