Reference Gene Selection for qPCR Normalization of Kosteletzkya virginica under Salt Stress
文献类型: 外文期刊
作者: Tang, Xiaoli 1 ; Wang, Hongyan 1 ; Shao, Chuyang 4 ; Shao, Hongbo 1 ;
作者机构: 1.Chinese Acad Sci, Yantai Inst Coastal Zone Res YIC, Key Lab Coastal Biol & Bioresources Utilizat, Yantai 264003, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100039, Peoples R China
3.China Agr Univ, Yantai Acad, Yantai 264670, Peoples R China
4.Shandong Agr Univ, Coll Life Sci, Tai An 271018, Shandong, Peoples R China
5.Jiangsu Acad Agr Sci, Inst Agrobiotechnol, Nanjing 210014, Jiangsu, Peoples R China
期刊名称:BIOMED RESEARCH INTERNATIONAL ( 影响因子:3.411; 五年影响因子:3.62 )
ISSN: 2314-6133
年卷期: 2015 年
页码:
收录情况: SCI
摘要: Kosteletzkya virginica (L.) is a newly introduced perennial halophytic plant. Presently, reverse transcription quantitative real-time PCR (qPCR) is regarded as the best choice for analyzing gene expression and its accuracy mainly depends on the reference genes which are used for gene expression normalization. In this study, we employed qPCR to select the most stable reference gene in K. virginica which showed stable expression profiles under our experimental conditions. The candidate reference genes were 18S ribosomal RNA (18SrRNA), beta-actin (ACT), alpha-tubulin (TUA), and elongation factor (EF). We tracked the gene expression profiles of the candidate genes and analyzed their stabilities through BestKeeper, geNorm, and NormFinder software programs. The results of the three programs were identical and 18SrRNA was assessed to be the most stable reference gene in this study. However, TUA was identified to be the most unstable. Our study proved again that the traditional reference genes indeed displayed a certain degree of variations under given experimental conditions. Importantly, our research also provides guidance for selecting most suitable reference genes and lays the foundation for further studies in K. virginica.
- 相关文献
作者其他论文 更多>>
-
Depiction of the dairy product supplemented with the exopolysaccharide from Pediococcus acidilactici BCB1H by metabolomics analysis
作者:Hu, Gege;Hu, Hangyu;Aziz, Tariq;Yang, Zhennai;Aziz, Tariq;Shao, Hongbo;Shao, Hongbo;Alharbi, Metab;Albekairi, Thamer H.;Alasmari, Abdullah F.
关键词:Pediococcus acidilactici; Exopolysaccharide; Yogurt; Dairy products; Metabolomics
-
Advances in Roles of Salicylic Acid in Plant Tolerance Responses to Biotic and Abiotic Stresses
作者:Song, Weiyi;Zheng, Aizhen;Zhao, Longfei;Xu, Yajun;Song, Weiyi;Zheng, Aizhen;Zhao, Longfei;Xu, Yajun;Shao, Hongbo;Shao, Hongbo
关键词:salicylic acid; biotic stresses; abiotic stresses; tolerance; immunity; yield
-
Developments and Prospects of Farmland Application of Biogas Slurry in China-A Review
作者:Wang, Zichen;Wang, Jidong;Shao, Hongbo;Wang, Zichen;Sanusi, Isaac A.;Kana, Evariste B. Gueguim;Olaniran, Ademola O.;Wang, Zichen;Ye, Xiaomei;Wang, Zichen;Wang, Jidong;Shao, Hongbo
关键词:biogas slurry; liquid digestate; anaerobic digestion effluent; microorganisms; harsh environments; plant-soil interactions; environmental stress
-
Improving soil fertility by driving microbial community changes in saline soils of Yellow River Delta under petroleum pollution
作者:Wang, Bingchen;Kuang, Shaoping;Shao, Hongbo;Cheng, Fei;Wang, Huihui
关键词:Petroleum pollution; Yellow river delta; Microbial community; Physicochemical property; High-throughput sequence
-
Aging Characteristics and Fate Analysis of Liquid Digestate Ammonium Nitrogen Disposal in Farmland Soil
作者:Wang, Zichen;Sun, Guofeng;Zhang, Liping;Zhou, Wei;Sheng, Jing;Shao, Hongbo;Wang, Zichen;Olaniran, Ademola O.;Kana, Evariste B. Gueguim;Wang, Zichen;Sun, Guofeng;Zhang, Liping;Zhou, Wei;Sheng, Jing;Ye, Xiaomei
关键词:waste biomass utilization; liquid digestate; ammonium nitrogen; sorption; migration; transformation
-
Determining the influencing factors of preferential flow in ground fissures for coal mine dump eco-engineering
作者:Li, Yexin;Lv, Gang;Du, Xinpeng;Liang, Dong;Wang, Daohan;Li, Yexin;Shao, Hongbo;Shao, Hongbo;Shao, Hongbo;Kuang, Shaoping;Dai, Quanhou
关键词:Preferential flow; Eco-engineering dump; Dye tracer; Ground fissures; Roots
-
Characterization of Interactions between the Soybean Salt-Stress Responsive Membrane-Intrinsic Proteins GmPIP1 and GmPIP2
作者:Liu, Jia;Qi, Weicong;Lu, Haiying;Shao, Hongbo;Liu, Jia;Shao, Hongbo;Shao, Hongbo;Zhang, Dayong
关键词:gene expression; GmPIPs; protein interactions; salt stress; soybean