Genome-wide analysis of the homeodomain-leucine zipper (HD-ZIP) gene family in peach (Prunus persica)
文献类型: 外文期刊
作者: Zhang, C. H. 1 ; Ma, R. J. 1 ; Shen, Z. J. 1 ; Sun, X. 2 ; Korir, N. K. 3 ; Yu, M. L. 1 ;
作者机构: 1.Jiangsu Acad Agr Sci, Inst Hort, Nanjing, Jiangsu, Peoples R China
2.Nanjing Agr Univ, Coll Hort, Nanjing, Jiangsu, Peoples R China
3.Kenyatta Univ, Dept Agr Technol, Nairobi, Kenya
关键词: Peach;Homeodomain-leucine zipper family;Phylogenetic analysis
期刊名称:GENETICS AND MOLECULAR RESEARCH ( 影响因子:0.764; 五年影响因子:0.912 )
ISSN: 1676-5680
年卷期: 2014 年 13 卷 2 期
页码:
收录情况: SCI
摘要: In this study, 33 homeodomain-leucine zipper (HD-ZIP) genes were identified in peach using the HD-ZIP amino acid sequences of Arabidopsis thaliana as a probe. Based on the phylogenetic analysis and the individual gene or protein characteristics, the HD-ZIP gene family in peach can be classified into 4 subfamilies, HD-ZIP I, II, III, and IV, containing 14, 7, 4, and 8 members, respectively. The most closely related peach HD-ZIP members within the same subfamilies shared very similar gene structure in terms of either intron/exon numbers or lengths. Almost all members of the same subfamily shared common motif compositions, thereby implying that the HD-ZIP proteins within the same subfamily may have functional similarity. The 33 peach HD-ZIP genes were distributed across scaffolds 1 to 7. Although the primary structure varied among HD-ZIP family proteins, their tertiary structures were similar. The results from this study will be useful in selecting candidate genes from specific subfamilies for functional analysis.
- 相关文献
作者其他论文 更多>>
-
Isolation, expression, and microRNAs analysis of genes related to carotenoid metabolism in peach fruits
作者:Zhang, C. H.;Ma, R. J.;Zhang, Y. Y.;Yu, M. L.
关键词:
-
A linear regression freezing point prediction model for peach (Prunus persica) fruits
作者:Zhang, B. B.;Ma, R. J.;Cai, Z. X.;Yan, Z. M.;Yu, M. L.
关键词:fruit; storage; influencing factor; quality character; gray relational grade analysis; correlation analysis
-
Ultrastructural abnormalities in pollen and anther wall development may lead to low pollen viability in jasmine (Jasminum sambac (L.) Aiton, Oleaceae)
作者:Deng, Y.;Liang, L.;Sun, X.;Jia, X.;Su, J.;Gu, C.
关键词:Jasminum sambac;Anther anatomy;Microspore ultrastructure;Pollen development;Reproductive barrier
-
Effect of salicylic acid on freezing injury in peach floral organs and the expressions of CBF genes
作者:Ma, R. J.
关键词:ovary;petals;Prunus persica;stigma;style
-
Isolation and expression analysis of four HD-ZIP III family genes targeted by microRNA166 in peach
作者:Zhang, C. H.;Zhang, B. B.;Ma, R. J.;Yu, M. L.;Guo, S. L.;Guo, L.
关键词:Peach;MicroRNA166;HD-ZIP III family genes;Isolation;Gene expression
-
Potassium contributes to zinc stress tolerance in peach (Prunus persica) seedlings by enhancing photosynthesis and the antioxidant defense system
作者:Song, Z. Z.;Guo, S. L.;Yang, Y.;Ma, R. J.;Yu, M. L.;Song, Z. Z.;Guo, S. L.;Yang, Y.;Ma, R. J.;Yu, M. L.;Duan, C. L.;Feng, Y. F.
关键词:Potassium;Photosynthesis;Antioxidant defense system;Peach;Zinc stress
-
Diversity, population structure, and evolution of local peach cultivars in China identified by simple sequence repeats
作者:Shen, Z. J.;Zhang, Z.;Shen, Z. J.;Ma, R. J.;Cai, Z. X.;Yu, M. L.
关键词:Peach;Simple sequence repeat (SSR);Local cultivar;Genetic relationship;Population structure;Evolution