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Selection and validation of internal control genes for quantitative real-time RT-qPCR normalization of Phlebopus portentosus gene expression under different conditions

文献类型： 外文期刊

作者： Hu, Chen-Menghui 1 ; Zhou, Chen-Li 1 ; Wan, Jia-Ning 1 ; Guo, Ting 1 ; Ji, Guang-Yan 2 ; Luo, Shun-Zhen 2 ; Ji, Kai-Ping 2 ; Cao, Yang 2 ; Tan, Qi 1 ; Bao, Da-Peng 1 ; Yang, Rui-Heng 1 ;

作者机构： 1.Shanghai Acad Agr Sci, Key Lab Edible Fungi Resources & Utilizat South, Natl Engn Res Ctr Edible Fungi,Inst Edible Fungi, Minist Agr,Key Lab Agr Genet & Breeding Shanghai, Shanghai, Peoples R China

2.Hongzhen Agr Sci & Technol Co Ltd, Jinghong, Peoples R China

期刊名称：PLOS ONE （ 影响因子：3.7； 五年影响因子：3.8 ）

ISSN： 1932-6203

年卷期： 2023 年 18 卷 9 期

页码：

收录情况： SCI

摘要： Phlebopus portentosus (Berk. and Broome) Boedijn is an attractive edible mushroom and is considered the only bolete for which artificial cultivation in vitro has been achieved. Gene expression analysis has become widely used in research on edible fungi and is important for elucidating the functions of genes involved in complex biological processes. Selecting appropriate reference genes is crucial to ensuring reliable RT-qPCR gene expression analysis results. In our study, a total of 12 candidate control genes were selected from 25 traditional housekeeping genes based on their expression stability in 9 transcriptomes of 3 developmental stages. These genes were further evaluated using geNorm, NormFinder, and RefFinder under different conditions and developmental stages. The results revealed that MSF1 domain-containing protein (MSF1), synaptobrevin (SYB), mitogen-activated protein kinase genes (MAPK), TATA-binding protein 1 (TBP1), and SPRY domain protein (SPRY) were the most stable reference genes in all sample treatments, while elongation factor 1-alpha (EF1), actin and ubiquitin-conjugating enzyme (UBCE) were the most unstably expressed. The gene SYB was selected based on the transcriptome results and was identified as a novel reference gene in P. portentosus. This is the first detailed study on the identification of reference genes in this fungus and may provide new insights into selecting genes and quantifying gene expression.

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