Cross-species applicability of chicken microsatellite markers for investigation of genetic diversity in Indian duck (Anas platyrhynchos) populations

文献类型: 外文期刊

第一作者: Mukesh

作者: Mukesh;Sathyakumar, S.;Mukesh;Javed, Ruheena;Javed, Ruheena;Gaur, Uma;Han Jianlin

作者机构:

关键词: Chicken microsatellites;Cross-species amplification;Anas platyrhynchos;Genetic diversity

期刊名称:AFRICAN JOURNAL OF BIOTECHNOLOGY ( 影响因子:0.573; 五年影响因子:0.794 )

ISSN: 1684-5315

年卷期: 2011 年 10 卷 76 期

页码:

收录情况: SCI

摘要: We obtained blood samples of 57 Indian ducks (Anas platyrhynchos) belonging to three indigenous duck populations of geographically distinct locations of the country and genotyped them using chicken microsatellite markers. Twenty three of the 30 loci were amplified and 17 loci yielded high success rate (>91%). Observed and effective number of alleles ranged from 4 to 21 and 1.80 to 13.34, respectively. The observed heterozygosity across populations ranged from between 0.15 and 0.91, with mean (+/- SE) of 0.63 +/- 0.21, while the expected heterozygosity ranged 0.45 to 0.94 with mean (+/- SE) of 0.72 +/- 0.13. The polymorphic information content (PIC) ranged from 0.43 to 0.92 with an average of 0.68. Eleven loci confirmed Hardy-Weinberg equilibrium (P>0.05) and no evidence for linkage disequilibrium was observed among pairs of loci. Dendrogram based on Nei's genetic distance grouped Assam and West Bengal duck populations and separated the Uttarakhand duck population. The results provide evidences of the applicability of chicken microsatellite markers in determining the genetic variations and relationship among three ducks populations in India.

分类号:

  • 相关文献

[1]Development of thirty-five novel polymorphic microsatellite markers in Pseudosciaena polyactis (Perciformes:Sciaenidae) and cross-species amplification in closely related species, Pseudosciaena crocea. Chen, Wenming,Cheng, Qiqun,Chen, Wenming.

[2]Isolation via enrichment and characterization of 14 dinucleotide microsatellite loci in one catfish, Glyptosternum maculatum and cross-amplification in other related taxa. Guo, Baoying,Xie, Congxin,Li, Hongjing,Shan, Lei,Wang, Huanling,Huo, Bin,Zhou, Qing,Zhang, Yan.

[3]Transcriptome analysis of adiposity in domestic ducks by transcriptomic comparison with their wild counterparts. Chen, L.,Li, J. J.,Wang, D. Q.,Tian, Y.,Lu, L. Z.,Luo, J.,Li, J. X..

[4]Development of New Microsatellite DNA Markers from Apostichopus japonicus and Their Cross-Species Application in Parastichopus parvimensis and Pathallus mollis. Liao, Meijie,Wang, Yingeng,Rong, Xiaojun,Zhang, Zheng,Li, Bin,Wang, Lan,Chen, Guiping. 2011

[5]Isolation of novel microsatellite markers from Paralichthys lethostigma (Paralichthyidae) and their cross-species application in Pleuronectiformes. Xu, Y. -J.,Liao, M. -J.,Wang, Y. -G.,Liu, Z. -C.,Qin, P.,Zhang, Z.,Rong, X. -J.,Liu, X. -Z.. 2013

[6]Development and characterization of 60 novel EST-SSR markers in half-smooth tongue sole Cynoglossus semilaevis. Sha, Z-X.,Luo, X-H.,Liao, X-L.,Wang, Q-L.,Chen, S-L.,Wang, S-L.,Wang, S-L.. 2011

[7]Isolation and characterization of 31 polymorphic microsatellite markers in barfin flounder (Verasper moseri) and the cross-species amplification in spotted halibut (Verasper variegatus). Ma, Hongyu,Chen, Songlin,Ma, Hongyu. 2009

[8]Polymorphic microsatellite markers in the false kelpfish Sebastiscus marmoratus: isolation, characterization, and cross-species amplification. Liu, H. B.,Liu, H. B.,Liu, S. F.,Ye, J. B.,Yuan, Y. J.,Zhuang, Z. M.,Yuan, Y. J.,Ding, S. X.. 2014

[9]Development of thirty-four novel polymorphic microsatellite markers in Coilia ectenes (Clupeiformes: Engraulidae) and cross-species amplification in two closely related taxa. Chen, Fang,Zeng, Liyan,Cheng, Qiqun,Chen, Fang. 2012

[10]Development of 20 Microsatellite Markers for Solenocera crassicornis and Their Cross-Species Application in Solenocera melantho. Liu, Shufang,Liu, Hongbo,Yuan, Yanjiao,Dai, Fangqun,Zhuang, Zhimeng,Liu, Hongbo,Lin, Lin,Yuan, Yanjiao. 2012

[11]Isolation and characterization of polymorphic microsatellite loci from an EST-library of red sea bream (Chrysophrys major) and cross-species amplification. Chen, SL,Liu, YG,Xu, MY,Li, J. 2005

[12]Analysis of microsatellites in major crops assessed by computational and experimental approaches. Gao, LF,Tang, JF,Li, HW,Jia, JZ. 2003

[13]Eight polymorphic microsatellite markers developed in the green leaf bug, Lygus lucorum Meyer-Dur (Hemiptera : Miridae). Liu, Yu-Di,Yang, Zhong-Cheng,Wu, Kong-Ming. 2007

[14]Thirteen microsatellite loci for Laodelphax striatellus and cross amplification in related taxa. Liu, Yudi,Hou, Maolin,Zhang, Baoqin. 2014

[15]Isolation and characterization of polymorphic microsatellite loci from a repeat-enriched genomic library of stone flounder (Kareius bicoloratus) and cross-species amplification. Tian, Yong-Sheng,Miao, Gui-Dong,Shao, Chang-Wei,Liao, Xiao-Lin,Chen, Song-Lin.

[16]Development of 12 polymorphic microsatellite markers in Coilia ectenes Jordan and Seale, 1905 (Clupeiformes: Engraulidae) and cross-species amplification in Coilia mystus Linnaeus, 1758. Ma, Chunyan,Cheng, Qiqun,Zhang, Qingyi.

[17]Isolation and characterization of polymorphic microsatellite loci from a dinucleotide-enriched genomic library of starry flounder (Platichthys stellatus) and cross-species amplification. Miao, Guidong,Ma, Hongyu,Liao, Xiaolin,Chen, Songlin,Miao, Guidong,Shao, Changwei,Ma, Hongyu.

[18]Identification of type I microsatellite markers associated with genes and ESTs in Scylla paramamosain. Ma, Hongyu,Ma, Chunyan,Ma, Lingbo.

[19]Taxonomic status and genetic diversity of cultured largemouth bass Micropterus salmoides in China. Bai, Junjie,Quan, Yingchun,Liang, Suxian,Lutz-Carrillo, Dijar J.,Liang, Suxian.

[20]Association mapping of yield-related traits and SSR markers in wild soybean (Glycine sofa Sieb. and Zucc.). Hu, Zhenbin,Zhang, Dan,Zhang, Guozheng,Kan, Guizhen,Hong, Delin,Yu, Deyue,Hu, Zhenbin,Zhang, Dan. 2014

作者其他论文 更多>>